Mir7649 Gene Detail

Summary

• Symbol
  Mir7649
• Name
  microRNA 7649
• Synonyms
  mmu-mir-7649

• Feature Type
  miRNA gene
• IDs
  MGI:5562774
  NCBI Gene: 102465757
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:128951803-128951858 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5562774	miRNA gene	Chr6:128951803-128951858 (-)
129S1/SvImJ	ENSMUSG00200047050	miRNA gene	Chr6:126040523-126040578 (-)
A/J	ENSMUSG00195033854	miRNA gene	Chr6:125460226-125460281 (-)
AKR/J	ENSMUSG00220039649	miRNA gene	Chr6:124321871-124321926 (-)
BALB/cJ	ENSMUSG00180037486	miRNA gene	Chr6:125797223-125797278 (-)
C3H/HeJ	ENSMUSG00175039377	miRNA gene	Chr6:125477438-125477493 (-)
C57BL/6NJ	ENSMUSG00215036542	miRNA gene	Chr6:125782075-125782130 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041103	miRNA gene	Chr6:125785018-125785073 (-)
CBA/J	ENSMUSG00210016658	miRNA gene	Chr6:125497271-125497326 (-)
DBA/2J	ENSMUSG00185045340	miRNA gene	Chr6:126198024-126198079 (-)
FVB/NJ	ENSMUSG00205036967	miRNA gene	Chr6:125064233-125064288 (-)
JF1/MsJ	ENSUMUG00000045958	miRNA gene	Chr6:124822057-124822112 (-)
LP/J	ENSMUSG00230045371	miRNA gene	Chr6:127394683-127394738 (-)
NOD/ShiLtJ	ENSMUSG00190036622	miRNA gene	Chr6:125192092-125192147 (-)
NZO/HlLtJ	ENSMUSG00225017215	miRNA gene	Chr6:129674274-129674329 (-)
PWK/PhJ	ENSLUMG00010045164	miRNA gene	Chr6:124013554-124013609 (-)
SPRET/EiJ	ENSMSPG00010041340	miRNA gene	Chr6:126734930-126734985 (-)
WSB/EiJ	ENSIUOG00005047995	miRNA gene	Chr6:125942323-125942378 (-)

Homology

• Gene Tree
  Mir7649
  

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000119708 (Evidence)
• NCBI Gene
  102465757

Representative Sequences			Length	Strain/Species
genomic	102465757	NCBI Gene Model | MGI Sequence Detail	56	C57BL/6J
transcript	NR_106107	RefSeq | MGI Sequence Detail	56	ZRU/MplStud

Other Database
Links

miRBase

MI0024987

References

• Summaries
  All 4
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir7649:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63530	Chr6:128951861-128951882 (-)	-14 bp