Mir6906 Gene Detail

Summary

• Symbol
  Mir6906
• Name
  microRNA 6906
• Synonyms
  mmu-mir-6906

• Feature Type
  miRNA gene
• IDs
  MGI:5562725
  NCBI Gene: 102465546
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:59962598-59962655 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5562725	miRNA gene	Chr10:59962598-59962655 (+)
129S1/SvImJ	ENSMUSG00200029907	miRNA gene	Chr10:56626902-56626959 (+)
A/J	ENSMUSG00195028154	miRNA gene	Chr10:56933765-56933822 (+)
AKR/J	ENSMUSG00220043122	miRNA gene	Chr10:56631488-56631545 (+)
BALB/cJ	ENSMUSG00180027389	miRNA gene	Chr10:56981649-56981706 (+)
C3H/HeJ	ENSMUSG00175025933	miRNA gene	Chr10:56834178-56834235 (+)
C57BL/6NJ	ENSMUSG00215033332	miRNA gene	Chr10:56579794-56579851 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007019	miRNA gene	Chr10:54602440-54602497 (+)
CAST/EiJ	ENSTCUG00005029966	miRNA gene	Chr10:56628079-56628136 (+)
CBA/J	ENSMUSG00210039192	miRNA gene	Chr10:56712487-56712544 (+)
DBA/2J	ENSMUSG00185043033	miRNA gene	Chr10:57059249-57059306 (+)
FVB/NJ	ENSMUSG00205035947	miRNA gene	Chr10:56731664-56731721 (+)
JF1/MsJ	ENSUMUG00000023277	miRNA gene	Chr10:58294902-58294959 (+)
LP/J	ENSMUSG00230023436	miRNA gene	Chr10:58862462-58862519 (+)
NOD/ShiLtJ	ENSMUSG00190037682	miRNA gene	Chr10:57045086-57045143 (+)
NZO/HlLtJ	ENSMUSG00225045446	miRNA gene	Chr10:63143398-63143455 (+)
PWK/PhJ	ENSLUMG00010023877	miRNA gene	Chr10:56648182-56648239 (+)
SPRET/EiJ	ENSMSPG00010026264	miRNA gene	Chr10:58231050-58231107 (+)
WSB/EiJ	ENSIUOG00005041438	miRNA gene	Chr10:56610635-56610692 (+)

Homology

• Gene Tree
  Mir6906
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Mir6906
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000105468 (Evidence)
• NCBI Gene
  102465546

Representative Sequences			Length	Strain/Species
genomic	102465546	NCBI Gene Model | MGI Sequence Detail	58	C57BL/6J
transcript	NR_105871	RefSeq | MGI Sequence Detail	58	ZRU/MplStud

Other Database
Links

miRBase

MI0022753

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir6906:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93523	Chr10:59961946-59961976 (+)	-637 bp