Gm28043 Gene Detail

Summary

• Symbol
  Gm28043
• Name
  predicted gene, 28043

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5547779
  NCBI Gene: 106014251
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:29833850-29922333 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  510 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5547779	protein coding gene	Chr17:29833763-29924953 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0023470	protein coding gene	Chr17:29160193-29251109 (+)
A/J	MGP_AJ_G0023428	protein coding gene	Chr17:28189526-28280804 (+)
AKR/J	MGP_AKRJ_G0023393	protein coding gene	Chr17:28409141-28497859 (+)
BALB/cJ	MGP_BALBcJ_G0023433	protein coding gene	Chr17:28420654-28509978 (+)
C3H/HeJ	MGP_C3HHeJ_G0023194	protein coding gene	Chr17:28790471-28884968 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0023875	protein coding gene	Chr17:30300438-30397452 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021349	protein coding gene	Chr17:25487223-25576983 (+)
CAST/EiJ	MGP_CASTEiJ_G0022695	protein coding gene	Chr17:28770870-28864812 (+)
CBA/J	MGP_CBAJ_G0023169	protein coding gene	Chr17:31458915-31565814 (+)
DBA/2J	MGP_DBA2J_G0023299	protein coding gene	Chr17:27682796-27771911 (+)
FVB/NJ	MGP_FVBNJ_G0023269	protein coding gene	Chr17:27524067-27612498 (+)
LP/J	MGP_LPJ_G0023377	protein coding gene	Chr17:29418723-29512130 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023287	protein coding gene	Chr17:30769823-30866433 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023917	protein coding gene	Chr17:28871180-28967254 (+)
PWK/PhJ	MGP_PWKPhJ_G0022445	protein coding gene	Chr17:26529480-26623449 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022263	protein coding gene	Chr17:26850891-26962409 (+)
WSB/EiJ	MGP_WSBEiJ_G0022757	protein coding gene	Chr17:28841204-28935974 (+)

Homology

• Gene Tree
  Gm28043
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000098374 (Evidence)
• NCBI Gene
  106014251

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098374	Ensembl Gene Model | MGI Sequence Detail	88484	C57BL/6J
transcript	ENSMUST00000130871	Ensembl | MGI Sequence Detail	6521	Not Applicable
polypeptide	ENSMUSP00000117838	Ensembl | MGI Sequence Detail	719	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• EC
  2.3.2.27
• InterPro Domains
  IPR017335 E3 ubiquitin-protein ligase RNF8
  IPR000253 Forkhead-associated (FHA) domain
  IPR000467 G-patch domain
  IPR008984 SMAD/FHA domain superfamily
  IPR018957 Zinc finger, C3HC4 RING-type
  IPR013083 Zinc finger, RING/FYVE/PHD-type
  IPR001841 Zinc finger, RING-type
  IPR017907 Zinc finger, RING-type, conserved site

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm28043:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143583	Chr17:29833822-29833902 (+)	12 bp
Tssr143584	Chr17:29833921-29833932 (+)	77 bp
Tssr143585	Chr17:29855979-29856021 (+)	22,150 bp