Gm28040 Gene Detail

Summary

• Symbol
  Gm28040
• Name
  predicted gene, 28040

• Feature Type
  protein coding gene
• IDs
  MGI:5547776
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:133237565-133257460 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5547776	protein coding gene	Chr1:133237565-133257639 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0014599	protein coding gene	Chr1:124919937-124939372 (+)
CAST/EiJ	ENSTCUG00005033210	protein coding gene	Chr1:129085490-129093537 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000039359	protein coding gene	Chr1:133582802-133590814 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010025518	protein coding gene	Chr1:129198838-129206855 (+)
SPRET/EiJ	ENSMSPG00010044659	protein coding gene	Chr1:132003054-132011008 (+)
WSB/EiJ	ENSIUOG00005043500	protein coding gene	Chr1:129804190-129812202 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm28040
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000098306 (Evidence), ENSMUSG00000115958 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115958	Ensembl Gene Model | MGI Sequence Detail	19896	C57BL/6J
transcript	ENSMUST00000193888	Ensembl | MGI Sequence Detail	624	Not Applicable
polypeptide	ENSMUSP00000142234	Ensembl | MGI Sequence Detail	126	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:256807 Ushiki A, et al., Long-Range Control of Renin Gene Expression in Tsukuba Hypertensive Mice. PLoS One. 2016;11(11):e0166974

TSS for Gm28040:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8800	Chr1:133251701-133251705 (+)	14,138 bp