Mir6406 Gene Detail

Summary

• Symbol
  Mir6406
• Name
  microRNA 6406
• Synonyms
  mmu-mir-6406

• Feature Type
  miRNA gene
• IDs
  MGI:5531363
  NCBI Gene: 102465219
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:68111718-68111837 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531363	miRNA gene	Chr11:68111718-68111837 (+)
129S1/SvImJ	ENSMUSG00200049982	miRNA gene	Chr11:65054613-65054732 (+)
A/J	ENSMUSG00195052583	miRNA gene	Chr11:65074060-65074180 (+)
AKR/J	ENSMUSG00220054253	miRNA gene	Chr11:65190317-65190437 (+)
BALB/cJ	ENSMUSG00180053945	miRNA gene	Chr11:65154209-65154329 (+)
C3H/HeJ	ENSMUSG00175054477	miRNA gene	Chr11:65104593-65104712 (+)
C57BL/6NJ	ENSMUSG00215055121	miRNA gene	Chr11:64880311-64880430 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007117	miRNA gene	Chr11:62937771-62937892 (+)
CAST/EiJ	ENSTCUG00005053687	miRNA gene	Chr11:64626014-64626131 (+)
CBA/J	ENSMUSG00210054421	miRNA gene	Chr11:64958694-64958813 (+)
DBA/2J	ENSMUSG00185056874	miRNA gene	Chr11:65152917-65153036 (+)
FVB/NJ	ENSMUSG00205053942	miRNA gene	Chr11:65049112-65049231 (+)
JF1/MsJ	ENSUMUG00000057293	miRNA gene	Chr11:65541224-65541343 (+)
LP/J	ENSMUSG00230053765	miRNA gene	Chr11:66265033-66265152 (+)
NOD/ShiLtJ	ENSMUSG00190054156	miRNA gene	Chr11:65186827-65186946 (+)
NZO/HlLtJ	ENSMUSG00225048626	miRNA gene	Chr11:68442046-68442165 (+)
PWK/PhJ	ENSLUMG00010053605	miRNA gene	Chr11:65060221-65060339 (+)
SPRET/EiJ	ENSMSPG00010049568	miRNA gene	Chr11:65801156-65801273 (+)
WSB/EiJ	ENSIUOG00005052566	miRNA gene	Chr11:65078743-65078863 (+)

Homology

• Gene Tree
  Mir6406
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir6406
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000099174 (Evidence)
• NCBI Gene
  102465219

Representative Sequences			Length	Strain/Species
genomic	102465219	NCBI Gene Model | MGI Sequence Detail	120	C57BL/6J
transcript	NR_105833	RefSeq | MGI Sequence Detail	120	ZRU/MplStud

Other Database
Links

miRBase

MI0021943

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4