Mir6945 Gene Detail

Summary

• Symbol
  Mir6945
• Name
  microRNA 6945
• Synonyms
  mmu-mir-6945

• Feature Type
  miRNA gene
• IDs
  MGI:5531161
  NCBI Gene: 102465570
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:55655438-55655505 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531161	miRNA gene	Chr13:55655438-55655505 (-)
129S1/SvImJ	ENSMUSG00200017340	miRNA gene	Chr13:52528014-52528081 (-)
A/J	ENSMUSG00195045290	miRNA gene	Chr13:51986824-51986891 (-)
AKR/J	ENSMUSG00220043441	miRNA gene	Chr13:51535396-51535463 (-)
BALB/cJ	ENSMUSG00180017139	miRNA gene	Chr13:52238080-52238147 (-)
C3H/HeJ	ENSMUSG00175046788	miRNA gene	Chr13:52024534-52024601 (-)
C57BL/6NJ	ENSMUSG00215039607	miRNA gene	Chr13:52057482-52057549 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007334	miRNA gene	Chr13:50900395-50900462 (-)
CAST/EiJ	ENSTCUG00005041729	miRNA gene	Chr13:52450029-52450096 (-)
CBA/J	ENSMUSG00210039336	miRNA gene	Chr13:52229353-52229420 (-)
DBA/2J	ENSMUSG00185018728	miRNA gene	Chr13:53079350-53079417 (-)
FVB/NJ	ENSMUSG00205046460	miRNA gene	Chr13:51882110-51882177 (-)
JF1/MsJ	ENSUMUG00000035095	miRNA gene	Chr13:52471506-52471573 (-)
LP/J	ENSMUSG00230035494	miRNA gene	Chr13:62421441-62421508 (-)
NOD/ShiLtJ	ENSMUSG00190038684	miRNA gene	Chr13:52122275-52122342 (-)
NZO/HlLtJ	ENSMUSG00225035360	miRNA gene	Chr13:56151125-56151192 (-)
PWK/PhJ	ENSLUMG00010023744	miRNA gene	Chr13:51343418-51343485 (-)
SPRET/EiJ	ENSMSPG00010042347	miRNA gene	Chr13:51762844-51762911 (-)
WSB/EiJ	ENSIUOG00005025365	miRNA gene	Chr13:51553248-51553315 (-)

Homology

• Gene Tree
  Mir6945
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Mir6945
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000099096 (Evidence)
• NCBI Gene
  102465570

Representative Sequences			Length	Strain/Species
genomic	102465570	NCBI Gene Model | MGI Sequence Detail	68	C57BL/6J
transcript	NR_105910	RefSeq | MGI Sequence Detail	68	ZRU/MplStud

Other Database
Links

miRBase

MI0022792

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:190741 Migdalska AM, et al., Generation of the Sotos syndrome deletion in mice. Mamm Genome. 2012 Dec;23(11-12):749-57

TSS for Mir6945:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122708	Chr13:55656112-55656139 (-)	-621 bp