Mir7040 Gene Detail

Summary

• Symbol
  Mir7040
• Name
  microRNA 7040
• Synonyms
  mmu-mir-7040

• Feature Type
  miRNA gene
• IDs
  MGI:5530871
  NCBI Gene: 102465630
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:83026692-83026754 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530871	miRNA gene	Chr6:83026692-83026754 (+)
129S1/SvImJ	ENSMUSG00200013013	miRNA gene	Chr6:79996048-79996110 (+)
A/J	ENSMUSG00195012273	miRNA gene	Chr6:79672769-79672831 (+)
AKR/J	ENSMUSG00220002018	miRNA gene	Chr6:78616208-78616270 (+)
BALB/cJ	ENSMUSG00180009985	miRNA gene	Chr6:80048775-80048837 (+)
C3H/HeJ	ENSMUSG00175043640	miRNA gene	Chr6:97361165-97361227 (-)
C57BL/6NJ	ENSMUSG00215016523	miRNA gene	Chr6:80046283-80046345 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008032	miRNA gene	Chr6:79198803-79198865 (+)
CAST/EiJ	ENSTCUG00005008409	miRNA gene	Chr6:80059199-80059261 (+)
CBA/J	ENSMUSG00210011501	miRNA gene	Chr6:79864677-79864739 (+)
DBA/2J	ENSMUSG00185001051	miRNA gene	Chr6:80411716-80411778 (+)
FVB/NJ	ENSMUSG00205029335	miRNA gene	Chr6:79090474-79090536 (+)
JF1/MsJ	ENSUMUG00000021913	miRNA gene	Chr6:79464822-79464884 (+)
LP/J	ENSMUSG00230050745	miRNA gene	Chr6:81553303-81553365 (+)
NOD/ShiLtJ	ENSMUSG00190001641	miRNA gene	Chr6:79493644-79493706 (+)
NZO/HlLtJ	ENSMUSG00225020644	miRNA gene	Chr6:83461443-83461505 (+)
PWK/PhJ	ENSLUMG00010006344	miRNA gene	Chr6:78815652-78815714 (+)
SPRET/EiJ	ENSMSPG00010045916	miRNA gene	Chr6:80969557-80969619 (+)
WSB/EiJ	ENSIUOG00005018991	miRNA gene	Chr6:80431401-80431463 (+)

Homology

• Gene Tree
  Mir7040
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Spontaneous
  1
• Genomic Mutations
  2 involving Mir7040
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000099035 (Evidence)
• NCBI Gene
  102465630

Representative Sequences			Length	Strain/Species
genomic	102465630	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J
transcript	NR_106007	RefSeq | MGI Sequence Detail	63	ZRU/MplStud

Other Database
Links

miRBase

MI0022889

References

• Summaries
  All 12

  Phenotypes 7
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for Mir7040:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57277	Chr6:83025504-83025509 (+)	-1,185 bp