Gm27252 Gene Detail

Summary

• Symbol
  Gm27252
• Name
  predicted gene 27252

• Feature Type
  lncRNA gene
• IDs
  MGI:5521095
  NCBI Gene: 102634962
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:63546132-63550285 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521095	lncRNA gene	Chr7:63546120-63550285 (+)
129S1/SvImJ	ENSMUSG00200009239	lncRNA gene	Chr7:50295065-50298833 (+)
A/J	ENSMUSG00195013658	lncRNA gene	Chr7:54701965-54705734 (+)
AKR/J	ENSMUSG00220011462	lncRNA gene	Chr7:48220872-48224644 (+)
BALB/cJ	ENSMUSG00180005079	lncRNA gene	Chr7:51434284-51438055 (+)
C3H/HeJ	ENSMUSG00175011139	lncRNA gene	Chr7:52165524-52169293 (+)
C57BL/6NJ	ENSMUSG00215026276	lncRNA gene	Chr7:51339867-51343636 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013797	unclassified non-coding RNA gene	Chr7:66729424-66732610 (+)
CAST/EiJ	ENSTCUG00005012289	lncRNA gene	Chr7:54911811-54915585 (+)
CBA/J	ENSMUSG00210020212	lncRNA gene	Chr7:52061688-52065457 (+)
DBA/2J	ENSMUSG00185006212	lncRNA gene	Chr7:56399120-56402899 (+)
FVB/NJ	ENSMUSG00205004688	lncRNA gene	Chr7:51998475-52002245 (+)
JF1/MsJ	ENSUMUG00000009302	lncRNA gene	Chr7:61144937-61148716 (+)
LP/J	ENSMUSG00230021161	lncRNA gene	Chr7:62414172-62417943 (+)
NOD/ShiLtJ	ENSMUSG00190007251	lncRNA gene	Chr7:52170430-52174198 (+)
NZO/HlLtJ	ENSMUSG00225016816	lncRNA gene	Chr7:60708981-60712749 (+)
PWK/PhJ	ENSLUMG00010019244	lncRNA gene	Chr7:50685937-50689719 (+)
SPRET/EiJ	ENSMSPG00010003739	lncRNA gene	Chr7:51071545-51075525 (+)
WSB/EiJ	ENSIUOG00005004847	lncRNA gene	Chr7:52597528-52601303 (+)

Homology

• Gene Tree
  Gm27252
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  19 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Targeted
  3
• Genomic Mutations
  6 involving Gm27252
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000098708 (Evidence)
• NCBI Gene
  102634962

Representative Sequences			Length	Strain/Species
genomic	102634962	NCBI Gene Model | MGI Sequence Detail	4154	C57BL/6J
transcript	NR_166574	RefSeq | MGI Sequence Detail	1677	ZRU/MplStud

References

• Summaries
  All 24

  Diseases 1

  Phenotypes 19
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:373377 Asenjo-Martinez A, et al., Dysfunction of cortical GABAergic projection neurons as a major hallmark in a model of neuropsychiatric syndrome. Neuron. 2025 Oct 1;113(19):3204-3223.e11

TSS for Gm27252:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66984	Chr7:63546127-63546140 (+)	2 bp
Tssr66985	Chr7:63546225-63546247 (+)	104 bp
Tssr2285	Chr7:63546250-63546262 (+)	124 bp
Tssr66986	Chr7:63547144-63547173 (+)	1,027 bp