Gm27246 Gene Detail

Summary

• Symbol
  Gm27246
• Name
  predicted gene 27246
• Synonyms
  Gm39216

• Feature Type
  lncRNA gene
• IDs
  MGI:5521089
  NCBI Gene: 102637261
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:87828348-87925037 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2771 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521089	lncRNA gene	Chr8:87819926-87925672 (+)
129S1/SvImJ	ENSMUSG00200017499	lncRNA gene	Chr8:82194036-82277843 (+)
A/J	ENSMUSG00195029120	lncRNA gene	Chr8:82550442-82634147 (+)
AKR/J	ENSMUSG00220039312	lncRNA gene	Chr8:82592906-82676723 (+)
BALB/cJ	ENSMUSG00180027138	lncRNA gene	Chr8:82397556-82481371 (+)
C3H/HeJ	ENSMUSG00175026357	lncRNA gene	Chr8:82485963-82569654 (+)
C57BL/6NJ	ENSMUSG00215028645	lncRNA gene	Chr8:82108032-82191791 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006691	lincRNA gene	Chr8:78663551-78747754 (+)
CAST/EiJ	ENSTCUG00005017085	lncRNA gene	Chr8:81965192-82048296 (+)
CBA/J	ENSMUSG00210038039	lncRNA gene	Chr8:82473053-82556749 (+)
DBA/2J	ENSMUSG00185040699	lncRNA gene	Chr8:88581600-88665294 (+)
FVB/NJ	ENSMUSG00205039587	lncRNA gene	Chr8:81528864-81612564 (+)
JF1/MsJ	ENSUMUG00000036210	lncRNA gene	Chr8:90890272-90973853 (+)
LP/J	ENSMUSG00230032012	lncRNA gene	Chr8:92190884-92274696 (+)
NOD/ShiLtJ	ENSMUSG00190015934	lncRNA gene	Chr8:82562945-82646709 (+)
NZO/HlLtJ	ENSMUSG00225040705	lncRNA gene	Chr8:95598854-95682618 (+)
PWK/PhJ	ENSLUMG00010042243	lncRNA gene	Chr8:82196773-82280718 (+)
SPRET/EiJ	ENSMSPG00010029356	lncRNA gene	Chr8:84117937-84213367 (+)
WSB/EiJ	ENSIUOG00005020918	lncRNA gene	Chr8:83281594-83365417 (+)

Homology

• Gene Tree
  Gm27246
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  30 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm27246
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  72
• RefSeq
  1

• Ensembl
  ENSMUSG00000098684 (Evidence)
• NCBI Gene
  102637261

Representative Sequences			Length	Strain/Species
genomic	102637261	NCBI Gene Model | MGI Sequence Detail	96690	C57BL/6J
transcript	NR_168261	RefSeq | MGI Sequence Detail	2010	ZRU/MplStud

Other
Accession IDs

MGI:5622101

References

• Summaries
  All 36

  Phenotypes 30
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for Gm27246:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78590	Chr8:87828344-87828351 (+)	0 bp
Tssr78591	Chr8:87901998-87902002 (+)	73,652 bp