Gm27239 Gene Detail

Summary

• Symbol
  Gm27239
• Name
  predicted gene 27239

• Feature Type
  lncRNA gene
• IDs
  MGI:5521082
  NCBI Gene: 102641244
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:81030671-81031787 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521082	lncRNA gene	Chr18:81030671-81031790 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003461	antisense lncRNA gene	Chr18:81926060-81927181 (+)
A/J	MGP_AJ_G0003440	antisense lncRNA gene	Chr18:78343396-78344515 (+)
AKR/J	MGP_AKRJ_G0003420	antisense lncRNA gene	Chr18:80681653-80682768 (+)
BALB/cJ	MGP_BALBcJ_G0003429	antisense lncRNA gene	Chr18:78526298-78527417 (+)
C3H/HeJ	MGP_C3HHeJ_G0003378	antisense lncRNA gene	Chr18:80766848-80767967 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003567	antisense lncRNA gene	Chr18:84008659-84009778 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003080	antisense lncRNA gene	Chr18:77179344-77180462 (+)
CAST/EiJ	MGP_CASTEiJ_G0003341	antisense lncRNA gene	Chr18:81106054-81107173 (+)
CBA/J	MGP_CBAJ_G0003375	antisense lncRNA gene	Chr18:87078908-87080027 (+)
DBA/2J	MGP_DBA2J_G0003383	antisense lncRNA gene	Chr18:77893661-77894780 (+)
FVB/NJ	MGP_FVBNJ_G0003401	antisense lncRNA gene	Chr18:77205659-77206778 (+)
LP/J	MGP_LPJ_G0003455	antisense lncRNA gene	Chr18:81787821-81788942 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003389	antisense lncRNA gene	Chr18:88332489-88333608 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003570	antisense lncRNA gene	Chr18:80838395-80839510 (+)
PWK/PhJ	MGP_PWKPhJ_G0003297	antisense lncRNA gene	Chr18:78294956-78296070 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003242	antisense lncRNA gene	Chr18:81013526-81014637 (+)
WSB/EiJ	MGP_WSBEiJ_G0003375	antisense lncRNA gene	Chr18:80792470-80793589 (+)

Homology

• Gene Tree
  Gm27239
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm27239
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098720 (Evidence)
• NCBI Gene
  102641244

Representative Sequences			Length	Strain/Species
genomic	102641244	NCBI Gene Model | MGI Sequence Detail	1117	C57BL/6J
transcript	NR_169072	RefSeq | MGI Sequence Detail	639	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;