Gm27234 Gene Detail

Summary

• Symbol
  Gm27234
• Name
  predicted gene 27234

• Feature Type
  lncRNA gene
• IDs
  MGI:5521077
  NCBI Gene: 102637238
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:76219740-76228128 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521077	lncRNA gene	Chr9:76219740-76228128 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004649	antisense lncRNA gene	Chr9:76688846-76690115 (+)
A/J	MGP_AJ_G0004630	antisense lncRNA gene	Chr9:74005826-74007095 (+)
AKR/J	MGP_AKRJ_G0004613	antisense lncRNA gene	Chr9:75782198-75783467 (+)
BALB/cJ	MGP_BALBcJ_G0004614	antisense lncRNA gene	Chr9:73677776-73679045 (+)
C3H/HeJ	MGP_C3HHeJ_G0004563	antisense lncRNA gene	Chr9:76244275-76245544 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004764	antisense lncRNA gene	Chr9:78728934-78730203 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004214	antisense lncRNA gene	Chr9:73322868-73324142 (+)
CAST/EiJ	MGP_CASTEiJ_G0004519	antisense lncRNA gene	Chr9:76597059-76598331 (+)
CBA/J	MGP_CBAJ_G0004557	antisense lncRNA gene	Chr9:81437482-81438751 (+)
DBA/2J	MGP_DBA2J_G0004572	antisense lncRNA gene	Chr9:73672139-73673408 (+)
FVB/NJ	MGP_FVBNJ_G0004590	antisense lncRNA gene	Chr9:72957733-72959002 (+)
LP/J	MGP_LPJ_G0004653	antisense lncRNA gene	Chr9:76920535-76921804 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004578	antisense lncRNA gene	Chr9:82544085-82545354 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004763	antisense lncRNA gene	Chr9:75943257-75944526 (+)
PWK/PhJ	MGP_PWKPhJ_G0004473	antisense lncRNA gene	Chr9:73931527-73932814 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004413	antisense lncRNA gene	Chr9:76175806-76177078 (+)
WSB/EiJ	MGP_WSBEiJ_G0004562	antisense lncRNA gene	Chr9:75857130-75858399 (+)

Homology

• Gene Tree
  Gm27234
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm27234
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000098894 (Evidence)
• NCBI Gene
  102637238

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098894	Ensembl Gene Model | MGI Sequence Detail	8389	C57BL/6J
transcript	ENSMUST00000247087	Ensembl | MGI Sequence Detail	1322	Not Applicable

References

• Summaries
  All 10

  Phenotypes 7
• Earliest
  J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
• Latest
  J:29898 Avraham KB, et al., The mouse Snell's waltzer deafness gene encodes an unconventional myosin required for structural integrity of inner ear hair cells. Nat Genet. 1995 Dec;11(4):369-75

TSS for Gm27234:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86190	Chr9:76219734-76219751 (+)	3 bp
Tssr86191	Chr9:76219790-76219800 (+)	55 bp