Gm27234 Gene Detail

Summary

• Symbol
  Gm27234
• Name
  predicted gene 27234

• Feature Type
  lncRNA gene
• IDs
  MGI:5521077
  NCBI Gene: 102637238
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:76219732-76228599 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  315 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521077	lncRNA gene	Chr9:76219732-76228599 (+)
129S1/SvImJ	ENSMUSG00200019596	lncRNA gene	Chr9:73327464-73335853 (+)
A/J	ENSMUSG00195011007	lncRNA gene	Chr9:73103178-73111571 (+)
AKR/J	ENSMUSG00220015230	lncRNA gene	Chr9:73238443-73246834 (+)
BALB/cJ	ENSMUSG00180018566	lncRNA gene	Chr9:73215802-73224187 (+)
C3H/HeJ	ENSMUSG00175012230	lncRNA gene	Chr9:73251620-73260007 (+)
C57BL/6NJ	ENSMUSG00215016002	lncRNA gene	Chr9:73178242-73186629 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004214	antisense lncRNA gene	Chr9:73322868-73324142 (+)
CAST/EiJ	ENSTCUG00005009501	lncRNA gene	Chr9:72918085-72926529 (+)
CBA/J	ENSMUSG00210013377	lncRNA gene	Chr9:73301569-73309962 (+)
DBA/2J	ENSMUSG00185007483	lncRNA gene	Chr9:73336555-73344944 (+)
FVB/NJ	ENSMUSG00205031147	lncRNA gene	Chr9:73611568-73619955 (+)
JF1/MsJ	ENSUMUG00000038183	lncRNA gene	Chr9:73313293-73321740 (+)
LP/J	ENSMUSG00230025430	lncRNA gene	Chr9:73504261-73512654 (+)
NOD/ShiLtJ	ENSMUSG00190034583	lncRNA gene	Chr9:73431214-73439609 (+)
NZO/HlLtJ	ENSMUSG00225026127	lncRNA gene	Chr9:73634015-73642404 (+)
PWK/PhJ	ENSLUMG00010016557	lncRNA gene	Chr9:73228590-73237004 (+)
SPRET/EiJ	ENSMSPG00010004181	lncRNA gene	Chr9:74411176-74419590 (+)
WSB/EiJ	ENSIUOG00005027168	lncRNA gene	Chr9:72779089-72787495 (+)

Homology

• Gene Tree
  Gm27234
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm27234
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000098894 (Evidence)
• NCBI Gene
  102637238

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098894	Ensembl Gene Model | MGI Sequence Detail	8868	C57BL/6J
transcript	ENSMUST00000247087	Ensembl | MGI Sequence Detail	1322	Not Applicable

References

• Summaries
  All 11

  Phenotypes 7
• Earliest
  J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
• Latest
  J:29898 Avraham KB, et al., The mouse Snell's waltzer deafness gene encodes an unconventional myosin required for structural integrity of inner ear hair cells. Nat Genet. 1995 Dec;11(4):369-75

TSS for Gm27234:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86190	Chr9:76219734-76219751 (+)	11 bp
Tssr86191	Chr9:76219790-76219800 (+)	63 bp