Gm27230 Gene Detail

Summary

• Symbol
  Gm27230
• Name
  predicted gene 27230

• Feature Type
  lncRNA gene
• IDs
  MGI:5521073
  NCBI Gene: 102635569
• Alliance
  genome feature page
• Transcription Start Sites
  12 TSS

Location &
Maps

• Sequence Map
  Chr9:72297669-72318177 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  730 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521073	lncRNA gene	Chr9:72286147-72331194 (+)
129S1/SvImJ	ENSMUSG00200044213	lncRNA gene	Chr9:69357597-69366142 (+)
A/J	ENSMUSG00195026722	lncRNA gene	Chr9:69155218-69163803 (+)
AKR/J	ENSMUSG00220042854	lncRNA gene	Chr9:69319739-69328278 (+)
BALB/cJ	ENSMUSG00180019099	lncRNA gene	Chr9:69269608-69278195 (+)
C3H/HeJ	ENSMUSG00175014090	lncRNA gene	Chr9:69282764-69291349 (+)
C57BL/6NJ	ENSMUSG00215036623	lncRNA gene	Chr9:69250325-69258862 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013863	unclassified non-coding RNA gene	Chr9:69517861-69526509 (+)
CAST/EiJ	ENSTCUG00005033148	lncRNA gene	Chr9:69093597-69102157 (+)
CBA/J	ENSMUSG00210014605	lncRNA gene	Chr9:69363340-69371923 (+)
DBA/2J	ENSMUSG00185034603	lncRNA gene	Chr9:69387197-69395780 (+)
FVB/NJ	ENSMUSG00205036719	lncRNA gene	Chr9:69660567-69669154 (+)
JF1/MsJ	ENSUMUG00000042037	lncRNA gene	Chr9:69427528-69436441 (+)
LP/J	ENSMUSG00230028186	lncRNA gene	Chr9:69552587-69561132 (+)
NOD/ShiLtJ	ENSMUSG00190023819	lncRNA gene	Chr9:69491254-69499839 (+)
NZO/HlLtJ	ENSMUSG00225047202	lncRNA gene	Chr9:69693776-69702359 (+)
PWK/PhJ	ENSLUMG00010026679	lncRNA gene	Chr9:69349427-69358340 (+)
SPRET/EiJ	ENSMSPG00010022537	lncRNA gene	Chr9:70452679-70461229 (+)
WSB/EiJ	ENSIUOG00005026832	lncRNA gene	Chr9:68863414-68871965 (+)

Homology

• Gene Tree
  Gm27230
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm27230
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  4

• Ensembl
  ENSMUSG00000098959 (Evidence)
• NCBI Gene
  102635569

Representative Sequences			Length	Strain/Species
genomic	102635569	NCBI Gene Model | MGI Sequence Detail	20509	C57BL/6J
transcript	AK040357	GenBank | ENA | DDBJ | MGI Sequence Detail	926	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm27230:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85981	Chr9:72297224-72297227 (+)	-443 bp
Tssr85986	Chr9:72303241-72303257 (+)	5,580 bp
Tssr85987	Chr9:72303541-72303561 (+)	5,882 bp
Tssr85988	Chr9:72303582-72303600 (+)	5,922 bp
Tssr85989	Chr9:72303609-72303627 (+)	5,949 bp
Tssr85990	Chr9:72303634-72303645 (+)	5,971 bp
Tssr85991	Chr9:72307625-72307634 (+)	9,961 bp
Tssr85992	Chr9:72307674-72307696 (+)	10,016 bp
Tssr85993	Chr9:72307706-72307716 (+)	10,042 bp
Tssr85994	Chr9:72309024-72309027 (+)	11,357 bp
Tssr85995	Chr9:72315847-72315856 (+)	18,183 bp
Tssr85996	Chr9:72315868-72315875 (+)	18,203 bp