Gm27200 Gene Detail

Summary

• Symbol
  Gm27200
• Name
  predicted gene 27200

• Feature Type
  lncRNA gene
• IDs
  MGI:5521043
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:155428140-155428922 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521043	lncRNA gene	Chr4:155428140-155428922 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004020	antisense lncRNA gene	Chr4:159666305-159667087 (+)
A/J	MGP_AJ_G0004001	antisense lncRNA gene	Chr4:152957693-152958475 (+)
AKR/J	MGP_AKRJ_G0003978	antisense lncRNA gene	Chr4:157118504-157119286 (+)
BALB/cJ	MGP_BALBcJ_G0003987	antisense lncRNA gene	Chr4:153427394-153428176 (+)
C3H/HeJ	MGP_C3HHeJ_G0003934	antisense lncRNA gene	Chr4:157658737-157659519 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004136	antisense lncRNA gene	Chr4:165351449-165352231 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003617	antisense lncRNA gene	Chr4:145252788-145253592 (+)
CAST/EiJ	MGP_CASTEiJ_G0003897	antisense lncRNA gene	Chr4:155093974-155094756 (+)
CBA/J	MGP_CBAJ_G0003927	antisense lncRNA gene	Chr4:170320654-170321436 (+)
DBA/2J	MGP_DBA2J_G0003943	antisense lncRNA gene	Chr4:152974469-152975251 (+)
FVB/NJ	MGP_FVBNJ_G0003962	antisense lncRNA gene	Chr4:152218839-152219621 (+)
LP/J	MGP_LPJ_G0004023	antisense lncRNA gene	Chr4:159583487-159584269 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003950	antisense lncRNA gene	Chr4:173171340-173172122 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004130	antisense lncRNA gene	Chr4:157727693-157728475 (+)
PWK/PhJ	MGP_PWKPhJ_G0003851	antisense lncRNA gene	Chr4:149108313-149109096 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003796	antisense lncRNA gene	Chr4:151989787-151990567 (+)
WSB/EiJ	MGP_WSBEiJ_G0003933	antisense lncRNA gene	Chr4:157899644-157900426 (+)

Homology

• Gene Tree
  Gm27200
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098729 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098729	Ensembl Gene Model | MGI Sequence Detail	783	C57BL/6J
transcript	ENSMUST00000184626	Ensembl | MGI Sequence Detail	657	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;