Gm27169 Gene Detail

Summary

• Symbol
  Gm27169
• Name
  predicted gene 27169

• Feature Type
  lncRNA gene
• IDs
  MGI:5521012
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:87929654-88020146 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic

Strain
Comparison

• SNPs within 2kb
  2700 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521012	lncRNA gene	Chr8:87929654-88020146 (+)
129S1/SvImJ	ENSMUSG00200017508	lncRNA gene	Chr8:82282460-82372935 (+)
A/J	ENSMUSG00195029150	lncRNA gene	Chr8:82638768-82729293 (+)
AKR/J	ENSMUSG00220039394	lncRNA gene	Chr8:82681338-82771809 (+)
BALB/cJ	ENSMUSG00180027256	lncRNA gene	Chr8:82485987-82576464 (+)
C3H/HeJ	ENSMUSG00175026406	lncRNA gene	Chr8:82574274-82664810 (+)
C57BL/6NJ	ENSMUSG00215028904	lncRNA gene	Chr8:82196412-82286892 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006693	lincRNA gene	Chr8:78752254-78840453 (+)
CAST/EiJ	ENSTCUG00005017102	lncRNA gene	Chr8:82053757-82143891 (+)
CBA/J	ENSMUSG00210038210	lncRNA gene	Chr8:82561370-82651891 (+)
DBA/2J	ENSMUSG00185040771	lncRNA gene	Chr8:88669914-88760427 (+)
FVB/NJ	ENSMUSG00205039645	lncRNA gene	Chr8:81617183-81707700 (+)
JF1/MsJ	ENSUMUG00000036319	lncRNA gene	Chr8:90978508-91062913 (+)
LP/J	ENSMUSG00230031838	lncRNA gene	Chr8:92279312-92369778 (+)
NOD/ShiLtJ	ENSMUSG00190015975	lncRNA gene	Chr8:82651331-82741808 (+)
NZO/HlLtJ	ENSMUSG00225040461	lncRNA gene	Chr8:95687240-95777718 (+)
PWK/PhJ	ENSLUMG00010042283	lncRNA gene	Chr8:82285372-82375113 (+)
SPRET/EiJ	ENSMSPG00010029426	lncRNA gene	Chr8:84217954-84310819 (+)
WSB/EiJ	ENSIUOG00005020963	lncRNA gene	Chr8:83370036-83460594 (+)

Homology

• Gene Tree
  Gm27169
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000098257 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098257	Ensembl Gene Model | MGI Sequence Detail	90493	C57BL/6J
transcript	ENSMUST00000183344	Ensembl | MGI Sequence Detail	746	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm27169:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78592	Chr8:87945200-87945219 (+)	15,556 bp