Gm27167 Gene Detail

Summary

• Symbol
  Gm27167
• Name
  predicted gene 27167

• Feature Type
  lncRNA gene
• IDs
  MGI:5521010
  NCBI Gene: 102636870
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:87614706-87653604 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic

Strain
Comparison

• SNPs within 2kb
  1410 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521010	lncRNA gene	Chr8:87614706-87653604 (+)
129S1/SvImJ	ENSMUSG00200017320	lncRNA gene	Chr8:81979155-82003007 (+)
A/J	ENSMUSG00195028479	lncRNA gene	Chr8:82342449-82359427 (+)
AKR/J	ENSMUSG00220039748	lncRNA gene	Chr8:82378028-82401878 (+)
BALB/cJ	ENSMUSG00180023268	lncRNA gene	Chr8:82182655-82206505 (+)
C3H/HeJ	ENSMUSG00175027383	lncRNA gene	Chr8:82277991-82294969 (+)
C57BL/6NJ	ENSMUSG00215029637	lncRNA gene	Chr8:81895827-81912792 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006689	lincRNA gene	Chr8:78468257-78485085 (+)
CAST/EiJ	ENSTCUG00005017440	lncRNA gene	Chr8:81750090-81767697 (+)
CBA/J	ENSMUSG00210036373	lncRNA gene	Chr8:82265073-82282047 (+)
DBA/2J	ENSMUSG00185038612	lncRNA gene	Chr8:88373635-88390613 (+)
FVB/NJ	ENSMUSG00205041144	lncRNA gene	Chr8:81320867-81337845 (+)
JF1/MsJ	ENSUMUG00000039627	lncRNA gene	Chr8:90667231-90699239 (+)
LP/J	ENSMUSG00230032017	lncRNA gene	Chr8:91976021-91999860 (+)
NOD/ShiLtJ	ENSMUSG00190015745	lncRNA gene	Chr8:82350778-82367749 (+)
NZO/HlLtJ	ENSMUSG00225040729	lncRNA gene	Chr8:95386682-95403651 (+)
PWK/PhJ	ENSLUMG00010044986	lncRNA gene	Chr8:81988449-82005580 (+)
SPRET/EiJ	ENSMSPG00010029626	lncRNA gene	Chr8:83912643-83929987 (+)
WSB/EiJ	ENSIUOG00005019872	lncRNA gene	Chr8:83065564-83082578 (+)

Homology

• Gene Tree
  Gm27167
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  33 phenotype references
  

• All Mutations and Alleles
  12
• Gene trapped
  11
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm27167
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000098534 (Evidence)
• NCBI Gene
  102636870

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098534	Ensembl Gene Model | MGI Sequence Detail	38899	C57BL/6J
transcript	ENSMUST00000303280	Ensembl | MGI Sequence Detail	2283	Not Applicable

References

• Summaries
  All 37

  Phenotypes 33
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for Gm27167:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78583	Chr8:87615029-87615047 (+)	332 bp
Tssr78584	Chr8:87620651-87620655 (+)	5,947 bp
Tssr78585	Chr8:87621756-87621766 (+)	7,055 bp