Gm27160 Pseudogene Detail

Summary

• Symbol
  Gm27160
• Name
  predicted gene 27160

• Feature Type
  pseudogene
• IDs
  MGI:5521003
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:36393592-36393790 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521003	pseudogene	Chr9:36393592-36393790 (+)
129S1/SvImJ	ENSMUSG00200040098	pseudogene	Chr9:33371121-33371319 (+)
A/J	ENSMUSG00195049706	pseudogene	Chr9:33162481-33162679 (+)
AKR/J	ENSMUSG00220047461	pseudogene	Chr9:33244526-33244724 (+)
BALB/cJ	ENSMUSG00180048423	pseudogene	Chr9:33290816-33291014 (+)
C3H/HeJ	ENSMUSG00175048027	pseudogene	Chr9:33291919-33292117 (+)
C57BL/6NJ	ENSMUSG00215033945	pseudogene	Chr9:33293266-33293464 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045076	pseudogene	Chr9:33263593-33263791 (+)
CBA/J	ENSMUSG00210045640	pseudogene	Chr9:33302337-33302535 (+)
DBA/2J	ENSMUSG00185039241	pseudogene	Chr9:33393958-33394156 (+)
FVB/NJ	ENSMUSG00205046044	pseudogene	Chr9:33657604-33657802 (+)
JF1/MsJ	ENSUMUG00000046316	pseudogene	Chr9:33526551-33526749 (+)
LP/J	ENSMUSG00230034841	pseudogene	Chr9:33789129-33789327 (+)
NOD/ShiLtJ	ENSMUSG00190030146	pseudogene	Chr9:33426049-33426247 (+)
NZO/HlLtJ	ENSMUSG00225022169	pseudogene	Chr9:33757221-33757419 (+)
PWK/PhJ	ENSLUMG00010047218	pseudogene	Chr9:33437647-33437845 (+)
SPRET/EiJ	ENSMSPG00010034437	pseudogene	Chr9:34015662-34015860 (+)
WSB/EiJ	ENSIUOG00005046485	pseudogene	Chr9:32914191-32914389 (+)

Homology

• Gene Tree
  Gm27160
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm27160
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098949 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098949	Ensembl Gene Model | MGI Sequence Detail	199	C57BL/6J
transcript	ENSMUST00000184837	Ensembl | MGI Sequence Detail	199	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506

TSS for Gm27160:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84365	Chr9:36393185-36393188 (+)	-405 bp