Gm27047 Pseudogene Detail

Summary

• Symbol
  Gm27047
• Name
  predicted gene, 27047

• Feature Type
  pseudogene
• IDs
  MGI:5504162
  NCBI Gene: 102636949
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:130606019-130607837 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504162	pseudogene	Chr6:130605238-130608019 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195033701	pseudogene	Chr6:127075851-127077665 (-)
AKR/J	ENSMUSG00220042768	pseudogene	Chr6:125660741-125662156 (-)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175042244	pseudogene	Chr6:127092910-127094724 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043472	pseudogene	Chr6:127422294-127424112 (-)
CAST/EiJ	ENSTCUG00005043641	pseudogene	Chr6:127962938-127964754 (-)
CBA/J	ENSMUSG00210017342	pseudogene	Chr6:127112607-127114421 (-)
DBA/2J	ENSMUSG00185046331	pseudogene	Chr6:127811129-127812943 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000047998	pseudogene	Chr6:126474964-126476778 (-)
LP/J	ENSMUSG00230046052	pseudogene	Chr6:129009993-129011807 (-)
NOD/ShiLtJ	ENSMUSG00190044737	pseudogene	Chr6:127411210-127413027 (-)
NZO/HlLtJ	ENSMUSG00225017335	pseudogene	Chr6:131331906-131333724 (-)
NZO/HlLtJ	ENSMUSG00225018741	pseudogene	Chr6:131872132-131873948 (-)
PWK/PhJ	ENSLUMG00010045042	pseudogene	Chr6:125596492-125598306 (-)
SPRET/EiJ	ENSMSPG00010044381	pseudogene	Chr6:128510023-128511672 (-)
WSB/EiJ	ENSIUOG00005048178	pseudogene	Chr6:128266088-128268155 (-)

Homology

• Gene Tree
  Gm27047
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000098214 (Evidence)
• NCBI Gene
  102636949

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098214	Ensembl Gene Model | MGI Sequence Detail	1819	C57BL/6J
transcript	ENSMUST00000183072	Ensembl | MGI Sequence Detail	1819	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;