Gm27042 Gene Detail

Summary

• Symbol
  Gm27042
• Name
  predicted gene, 27042

• Feature Type
  lncRNA gene
• IDs
  MGI:5504157
  NCBI Gene: 102636239
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:40576940-40583309 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  325 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504157	lncRNA gene	Chr19:40576847-40583317 (+)
129S1/SvImJ	ENSMUSG00200031946	lncRNA gene	Chr19:37321477-37326899 (+)
A/J	ENSMUSG00195012180	lncRNA gene	Chr19:37421385-37426813 (+)
AKR/J	ENSMUSG00220019076	lncRNA gene	Chr19:37231722-37237150 (+)
BALB/cJ	ENSMUSG00180034085	lncRNA gene	Chr19:37673820-37679248 (+)
C3H/HeJ	ENSMUSG00175042835	lncRNA gene	Chr19:37200819-37206254 (+)
C57BL/6NJ	ENSMUSG00215028622	lncRNA gene	Chr19:37267014-37272442 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005302	lincRNA gene	Chr19:37274753-37279792 (+)
CAST/EiJ	ENSTCUG00005015680	lncRNA gene	Chr19:36883892-36889124 (+)
CBA/J	ENSMUSG00210037426	lncRNA gene	Chr19:37283039-37288471 (+)
DBA/2J	ENSMUSG00185033916	lncRNA gene	Chr19:37803159-37808590 (+)
FVB/NJ	ENSMUSG00205007554	lncRNA gene	Chr19:36745603-36751029 (+)
JF1/MsJ	ENSUMUG00000047387	lncRNA gene	Chr19:37969768-37975000 (+)
LP/J	ENSMUSG00230036948	lncRNA gene	Chr19:38591666-38597094 (+)
NOD/ShiLtJ	ENSMUSG00190011417	lncRNA gene	Chr19:37152605-37158033 (+)
NZO/HlLtJ	ENSMUSG00225044675	lncRNA gene	Chr19:42141441-42146865 (+)
PWK/PhJ	ENSLUMG00010001474	lncRNA gene	Chr19:37144556-37149785 (+)
SPRET/EiJ	ENSMSPG00010023194	lncRNA gene	Chr19:36874526-36878945 (+)
WSB/EiJ	ENSIUOG00005038664	lncRNA gene	Chr19:36666191-36670612 (+)

Homology

• Gene Tree
  Gm27042
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000097792 (Evidence)
• NCBI Gene
  102636239

Representative Sequences			Length	Strain/Species
genomic	102636239	NCBI Gene Model | MGI Sequence Detail	6370	C57BL/6J
transcript	XR_386705	RefSeq | MGI Sequence Detail	1234	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14