Gm27023 Pseudogene Detail

Summary

• Symbol
  Gm27023
• Name
  predicted gene, 27023

• Feature Type
  pseudogene
• IDs
  MGI:5504138
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:62088678-62088962 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504138	pseudogene	Chr17:62088678-62088962 (+)
129S1/SvImJ	ENSMUSG00200016824	pseudogene	Chr17:57389706-57389990 (+)
A/J	ENSMUSG00195007301	pseudogene	Chr17:58764556-58764840 (+)
AKR/J	ENSMUSG00220013485	pseudogene	Chr17:57837395-57837679 (+)
BALB/cJ	ENSMUSG00180006310	pseudogene	Chr17:58508552-58508836 (+)
C3H/HeJ	ENSMUSG00175007643	pseudogene	Chr17:57820839-57821123 (+)
C57BL/6NJ	ENSMUSG00215009617	pseudogene	Chr17:57463367-57463651 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039516	pseudogene	Chr5:86432005-86432284 (+)
CAST/EiJ	ENSTCUG00005019737	pseudogene	Chr17:58468974-58469258 (+)
CBA/J	ENSMUSG00210028978	pseudogene	Chr17:57613259-57613543 (+)
DBA/2J	ENSMUSG00185009498	pseudogene	Chr17:60464784-60465068 (+)
FVB/NJ	ENSMUSG00205007627	pseudogene	Chr17:58102552-58102836 (+)
JF1/MsJ	ENSUMUG00000034442	pseudogene	Chr17:60150281-60150565 (+)
LP/J	ENSMUSG00230029461	pseudogene	Chr17:61436501-61436785 (+)
NOD/ShiLtJ	ENSMUSG00190010837	pseudogene	Chr17:57597068-57597352 (+)
NZO/HlLtJ	ENSMUSG00225026459	pseudogene	Chr17:63727035-63727319 (+)
PWK/PhJ	ENSLUMG00010009563	pseudogene	Chr17:57408670-57408954 (+)
PWK/PhJ	ENSLUMG00010034621	pseudogene	Chr17:89541943-89542222 (+)
SPRET/EiJ	ENSMSPG00010005930	pseudogene	Chr17:57760617-57760618 (+)
WSB/EiJ	ENSIUOG00005024224	pseudogene	Chr17:58437752-58438036 (+)

Homology

• Gene Tree
  Gm27023
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000098156 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098156	Ensembl Gene Model | MGI Sequence Detail	285	C57BL/6J
transcript	ENSMUST00000182372	Ensembl | MGI Sequence Detail	285	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm27023:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145534	Chr17:62088604-62088606 (+)	-73 bp