Gm27017 Gene Detail

Summary

• Symbol
  Gm27017
• Name
  predicted gene, 27017

• Feature Type
  lncRNA gene
• IDs
  MGI:5504132
  NCBI Gene: 102631857
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:61885796-61947220 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1399 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504132	lncRNA gene	Chr14:61885796-61947220 (+)
129S1/SvImJ	ENSMUSG00200042982	lncRNA gene	Chr14:50477989-50496364 (+)
A/J	ENSMUSG00195035466	lncRNA gene	Chr14:50661675-50680038 (+)
AKR/J	ENSMUSG00220034694	lncRNA gene	Chr14:50008935-50027299 (+)
BALB/cJ	ENSMUSG00180052266	lncRNA gene	Chr14:50283594-50301959 (+)
C3H/HeJ	ENSMUSG00175038496	lncRNA gene	Chr14:52013855-52032198 (+)
C57BL/6NJ	ENSMUSG00215050101	lncRNA gene	Chr14:50213285-50231652 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005048	lincRNA gene	Chr14:52787808-52805897 (+)
CAST/EiJ	ENSTCUG00005040973	lncRNA gene	Chr14:51921495-51939981 (+)
CBA/J	ENSMUSG00210047506	lncRNA gene	Chr14:50649673-50668036 (+)
DBA/2J	ENSMUSG00185033845	lncRNA gene	Chr14:55811595-55829965 (+)
FVB/NJ	ENSMUSG00205044577	lncRNA gene	Chr14:50168639-50187002 (+)
JF1/MsJ	ENSUMUG00000047482	lncRNA gene	Chr14:66999498-67017488 (+)
LP/J	ENSMUSG00230036953	lncRNA gene	Chr14:67841210-67859591 (+)
NOD/ShiLtJ	ENSMUSG00190049125	lncRNA gene	Chr14:50446061-50464424 (+)
NZO/HlLtJ	ENSMUSG00225047186	lncRNA gene	Chr14:58187645-58206008 (+)
PWK/PhJ	ENSLUMG00010052261	lncRNA gene	Chr14:49898955-49917318 (+)
SPRET/EiJ	ENSMSPG00010032894	lncRNA gene	Chr14:53303351-53321516 (+)
WSB/EiJ	ENSIUOG00005043667	lncRNA gene	Chr14:49880985-49899357 (+)

Homology

• Gene Tree
  Gm27017
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  5
• Targeted
  3
• Genomic Mutations
  4 involving Gm27017
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43

• Ensembl
  ENSMUSG00000097997 (Evidence)
• NCBI Gene
  102631857

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097997	Ensembl Gene Model | MGI Sequence Detail	61425	C57BL/6J
transcript	ENSMUST00000320187	Ensembl | MGI Sequence Detail	2353	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Diseases 2

  Phenotypes 8
• Earliest
  J:156946 Klein U, et al., The DLEU2/miR-15a/16-1 Cluster Controls B Cell Proliferation and Its Deletion Leads to Chronic Lymphocytic Leukemia. Cancer Cell. 2010 Jan 19;17(1):28-40
• Latest
  J:317184 Chesi M, et al., Monosomic loss of MIR15A/MIR16-1 is a driver of multiple myeloma proliferation and disease progression. Blood Cancer Discov. 2020 Jul;1(1):68-81

TSS for Gm27017:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125992	Chr14:61885809-61885814 (+)	16 bp
Tssr125993	Chr14:61885863-61885879 (+)	75 bp
Tssr125994	Chr14:61885884-61885894 (+)	93 bp
Tssr125995	Chr14:61885905-61885914 (+)	114 bp