Gm27006 Pseudogene Detail

Summary

• Symbol
  Gm27006
• Name
  predicted gene, 27006

• Feature Type
  pseudogene
• IDs
  MGI:5504121
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:80432226-80433168 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504121	pseudogene	Chr8:80432226-80433168 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014086	pseudogene	Chr8:80392907-80393849 (+)
A/J	MGP_AJ_G0014106	pseudogene	Chr8:77199075-77200017 (+)
AKR/J	MGP_AKRJ_G0014034	pseudogene	Chr8:79505424-79506366 (+)
BALB/cJ	MGP_BALBcJ_G0014060	pseudogene	Chr8:77313231-77314173 (+)
C3H/HeJ	MGP_C3HHeJ_G0013890	pseudogene	Chr8:80139201-80140143 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014499	pseudogene	Chr8:83477097-83478039 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012334	pseudogene	Chr8:71260245-71261203 (+)
CAST/EiJ	MGP_CASTEiJ_G0013550	pseudogene	Chr8:79474061-79475015 (+)
CBA/J	MGP_CBAJ_G0013872	pseudogene	Chr8:86412508-86413450 (+)
DBA/2J	MGP_DBA2J_G0013949	pseudogene	Chr8:76894617-76895559 (+)
FVB/NJ	MGP_FVBNJ_G0013952	pseudogene	Chr8:75862932-75863874 (+)
LP/J	MGP_LPJ_G0014037	pseudogene	Chr8:80473755-80474697 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013979	pseudogene	Chr8:88973351-88974293 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014472	pseudogene	Chr8:79527627-79528569 (+)
PWK/PhJ	MGP_PWKPhJ_G0013359	pseudogene	Chr8:76166917-76167872 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013141	pseudogene	Chr8:78337461-78338420 (+)
WSB/EiJ	MGP_WSBEiJ_G0013608	pseudogene	Chr8:79857362-79858304 (+)

Homology

• Gene Tree
  Gm27006
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm27006
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098101 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098101	Ensembl Gene Model | MGI Sequence Detail	943	C57BL/6J
transcript	ENSMUST00000182218	Ensembl | MGI Sequence Detail	943	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;