Gm27003 Gene Detail

Summary

• Symbol
  Gm27003
• Name
  predicted gene, 27003

• Feature Type
  lncRNA gene
• IDs
  MGI:5504118
  NCBI Gene: 105244282
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr2:126517490-126525725 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  243 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504118	lncRNA gene	Chr2:126517490-126525725 (+)
129S1/SvImJ	ENSMUSG00200048892	lncRNA gene	Chr2:123577752-123585653 (+)
A/J	ENSMUSG00195032796	lncRNA gene	Chr2:123598176-123606077 (+)
AKR/J	ENSMUSG00220046317	lncRNA gene	Chr2:123363975-123371876 (+)
BALB/cJ	ENSMUSG00180050582	lncRNA gene	Chr2:123385110-123393012 (+)
C3H/HeJ	ENSMUSG00175049039	lncRNA gene	Chr2:123928320-123936378 (+)
C57BL/6NJ	ENSMUSG00215033938	lncRNA gene	Chr2:123439093-123446995 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003248	antisense lncRNA gene	Chr2:119364934-119372744 (+)
CAST/EiJ	ENSTCUG00005040555	lncRNA gene	Chr2:122728845-122736565 (+)
CBA/J	ENSMUSG00210037742	lncRNA gene	Chr2:123776791-123784849 (+)
DBA/2J	ENSMUSG00185035436	lncRNA gene	Chr2:123430828-123438886 (+)
FVB/NJ	ENSMUSG00205044853	lncRNA gene	Chr2:122600776-122608680 (+)
JF1/MsJ	ENSUMUG00000028853	lncRNA gene	Chr2:123282663-123290337 (+)
LP/J	ENSMUSG00230039493	lncRNA gene	Chr2:125213204-125221105 (+)
NOD/ShiLtJ	ENSMUSG00190015488	lncRNA gene	Chr2:123571012-123578913 (+)
NZO/HlLtJ	ENSMUSG00225027440	lncRNA gene	Chr2:133119343-133127244 (+)
PWK/PhJ	ENSLUMG00010048388	lncRNA gene	Chr2:123177101-123184816 (+)
SPRET/EiJ	ENSMSPG00010032151	lncRNA gene	Chr2:125609530-125617241 (+)
WSB/EiJ	ENSIUOG00005045748	lncRNA gene	Chr2:123372874-123380560 (+)

Homology

• Gene Tree
  Gm27003
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  30
• Chemically induced (other)
  1
• Gene trapped
  28
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm27003
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000098024 (Evidence)
• NCBI Gene
  105244282

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098024	Ensembl Gene Model | MGI Sequence Detail	8236	C57BL/6J
transcript	ENSMUST00000247624	Ensembl | MGI Sequence Detail	651	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm27003:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19961	Chr2:126515516-126515526 (+)	-1,969 bp
Tssr19962	Chr2:126515569-126515579 (+)	-1,916 bp
Tssr19963	Chr2:126516562-126516566 (+)	-926 bp
Tssr19964	Chr2:126517217-126517267 (+)	-248 bp
Tssr19965	Chr2:126517818-126517830 (+)	334 bp