Gm27002 Gene Detail

Summary

• Symbol
  Gm27002
• Name
  predicted gene, 27002

• Feature Type
  lncRNA gene
• IDs
  MGI:5504117
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:115029452-115032999 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  228 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504117	lncRNA gene	Chr9:115029452-115032999 (+)
129S1/SvImJ	ENSMUSG00200032209	lncRNA gene	Chr9:112128040-112131581 (+)
A/J	ENSMUSG00195044821	lncRNA gene	Chr9:111311915-111315369 (+)
AKR/J	ENSMUSG00220020174	lncRNA gene	Chr9:111775475-111779016 (+)
BALB/cJ	ENSMUSG00180036309	lncRNA gene	Chr9:111849590-111853044 (+)
C3H/HeJ	ENSMUSG00175019774	lncRNA gene	Chr9:112071548-112075001 (+)
C57BL/6NJ	ENSMUSG00215036291	lncRNA gene	Chr9:111974991-111978471 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034632	sense intronic lncRNA gene	Chr9:110647470-110650805 (+)
CAST/EiJ	ENSTCUG00005017413	lncRNA gene	Chr9:111742782-111746240 (+)
CBA/J	ENSMUSG00210042472	lncRNA gene	Chr9:111817365-111820844 (+)
DBA/2J	ENSMUSG00185016875	lncRNA gene	Chr9:112154090-112157570 (+)
FVB/NJ	ENSMUSG00205034038	lncRNA gene	Chr9:111972420-111975975 (+)
JF1/MsJ	ENSUMUG00000051536	lncRNA gene	Chr9:111988654-111992130 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190050207	lncRNA gene	Chr9:111732152-111735629 (+)
NZO/HlLtJ	ENSMUSG00225024218	lncRNA gene	Chr9:112527543-112531018 (+)
PWK/PhJ	ENSLUMG00010038580	lncRNA gene	Chr9:111913159-111916632 (+)
SPRET/EiJ	ENSMSPG00010026537	lncRNA gene	Chr9:113576666-113579981 (+)
WSB/EiJ	ENSIUOG00005047865	lncRNA gene	Chr9:111193649-111197189 (+)

Homology

• Gene Tree
  Gm27002
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000097967 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097967	Ensembl Gene Model | MGI Sequence Detail	3548	C57BL/6J
transcript	ENSMUST00000329750	Ensembl | MGI Sequence Detail	831	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm27002:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87589	Chr9:115029463-115029506 (+)	33 bp
Tssr87590	Chr9:115029953-115029957 (+)	503 bp