Gm26947 Gene Detail

Summary

• Symbol
  Gm26947
• Name
  predicted gene, 26947

• Feature Type
  lncRNA gene
• IDs
  MGI:5504062
  NCBI Gene: 102640832
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:60767769-60776730 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  264 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504062	lncRNA gene	Chr10:60721215-60787423 (+)
129S1/SvImJ	ENSMUSG00200029128	lncRNA gene	Chr10:57433711-57453355 (+)
A/J	ENSMUSG00195028909	lncRNA gene	Chr10:57746189-57765845 (+)
AKR/J	ENSMUSG00220042466	lncRNA gene	Chr10:57438377-57458034 (+)
BALB/cJ	ENSMUSG00180028794	lncRNA gene	Chr10:57788499-57808157 (+)
C3H/HeJ	ENSMUSG00175025982	lncRNA gene	Chr10:57640959-57660603 (+)
C57BL/6NJ	ENSMUSG00215034359	lncRNA gene	Chr10:57386604-57406262 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002507	antisense lncRNA gene	Chr10:55415687-55424532 (+)
CAST/EiJ	ENSTCUG00005030515	lncRNA gene	Chr10:57433479-57453197 (+)
CBA/J	ENSMUSG00210039285	lncRNA gene	Chr10:57519272-57538916 (+)
DBA/2J	ENSMUSG00185042913	lncRNA gene	Chr10:57866023-57885679 (+)
FVB/NJ	ENSMUSG00205035106	lncRNA gene	Chr10:57539588-57559244 (+)
JF1/MsJ	ENSUMUG00000021601	lncRNA gene	Chr10:59101121-59120852 (+)
LP/J	ENSMUSG00230023530	lncRNA gene	Chr10:59669180-59688836 (+)
NOD/ShiLtJ	ENSMUSG00190037230	lncRNA gene	Chr10:57851841-57871485 (+)
NZO/HlLtJ	ENSMUSG00225045652	lncRNA gene	Chr10:63950114-63969770 (+)
PWK/PhJ	ENSLUMG00010023719	lncRNA gene	Chr10:57455982-57475404 (+)
SPRET/EiJ	ENSMSPG00010028088	lncRNA gene	Chr10:59055405-59074968 (+)
WSB/EiJ	ENSIUOG00005042202	lncRNA gene	Chr10:57423434-57443082 (+)

Homology

• Gene Tree
  Gm26947
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm26947
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  70
• RefSeq
  4

• Ensembl
  ENSMUSG00000098055 (Evidence)
• NCBI Gene
  102640832

Representative Sequences			Length	Strain/Species
genomic	102640832	NCBI Gene Model | MGI Sequence Detail	8962	C57BL/6J
transcript	AK158810	GenBank | ENA | DDBJ | MGI Sequence Detail	2936	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm26947:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93640	Chr10:60767769-60767783 (+)	7 bp
Tssr93641	Chr10:60767815-60767829 (+)	53 bp
Tssr93642	Chr10:60768117-60768144 (+)	362 bp
Tssr93643	Chr10:60768866-60768878 (+)	1,103 bp