Gm26944 Gene Detail

Summary

• Symbol
  Gm26944
• Name
  predicted gene, 26944

• Feature Type
  lncRNA gene
• IDs
  MGI:5504059
  NCBI Gene: 102635071
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:92285887-92296663 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  270 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504059	lncRNA gene	Chr7:92285887-92299235 (+)
129S1/SvImJ	ENSMUSG00200028265	lncRNA gene	Chr7:79073571-79081274 (+)
A/J	ENSMUSG00195039267	lncRNA gene	Chr7:83576621-83584297 (+)
AKR/J	ENSMUSG00220043712	lncRNA gene	Chr7:77046603-77054279 (+)
BALB/cJ	ENSMUSG00180037978	lncRNA gene	Chr7:80247387-80255063 (+)
C3H/HeJ	ENSMUSG00175025086	lncRNA gene	Chr7:80957335-80964832 (+)
C57BL/6NJ	ENSMUSG00215028951	lncRNA gene	Chr7:80129431-80137134 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006585	lincRNA gene	Chr7:95610496-95617886 (+)
CAST/EiJ	ENSTCUG00005034405	lncRNA gene	Chr7:83543004-83550495 (+)
CBA/J	ENSMUSG00210041529	lncRNA gene	Chr7:80799185-80806682 (+)
DBA/2J	ENSMUSG00185032432	lncRNA gene	Chr7:85128959-85136456 (+)
FVB/NJ	ENSMUSG00205036868	lncRNA gene	Chr7:80753071-80760747 (+)
JF1/MsJ	ENSUMUG00000026036	lncRNA gene	Chr7:90077985-90085408 (+)
LP/J	ENSMUSG00230045387	lncRNA gene	Chr7:91217987-91225484 (+)
NOD/ShiLtJ	ENSMUSG00190022617	lncRNA gene	Chr7:80998513-81006189 (+)
NZO/HlLtJ	ENSMUSG00225011847	lncRNA gene	Chr7:89493041-89500538 (+)
PWK/PhJ	ENSLUMG00010040748	lncRNA gene	Chr7:79287569-79294993 (+)
SPRET/EiJ	ENSMSPG00010012919	lncRNA gene	Chr7:80392899-80400341 (+)
WSB/EiJ	ENSIUOG00005010933	lncRNA gene	Chr7:81436933-81444430 (+)

Homology

• Gene Tree
  Gm26944
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  25 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  6
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm26944
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  4

• Ensembl
  ENSMUSG00000098066 (Evidence)
• NCBI Gene
  102635071

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098066	Ensembl Gene Model | MGI Sequence Detail	10777	C57BL/6J
transcript	ENSMUST00000341867	Ensembl | MGI Sequence Detail	1094	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 30

  Phenotypes 25
• Earliest
  J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26944:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67863	Chr7:92287507-92287510 (+)	1,622 bp