Gm26936 Gene Detail

Summary

• Symbol
  Gm26936
• Name
  predicted gene, 26936

• Feature Type
  lncRNA gene
• IDs
  MGI:5504051
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:137845426-137897013 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1546 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504051	lncRNA gene	Chr1:137845426-137897013 (-)
129S1/SvImJ	ENSMUSG00200008829	lncRNA gene	Chr1:135488441-135529331 (-)
A/J	ENSMUSG00195016601	lncRNA gene	Chr1:134578759-134619707 (-)
AKR/J	ENSMUSG00220003639	lncRNA gene	Chr1:134435567-134476429 (-)
BALB/cJ	ENSMUSG00180011812	lncRNA gene	Chr1:135085324-135126178 (-)
C3H/HeJ	ENSMUSG00175006854	lncRNA gene	Chr1:134796395-134837333 (-)
C57BL/6NJ	ENSMUSG00215025153	lncRNA gene	Chr1:134787221-134828087 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004512	lincRNA gene	Chr1:129495961-129537264 (-)
CAST/EiJ	ENSTCUG00005013334	lncRNA gene	Chr1:133720398-133761296 (-)
CBA/J	ENSMUSG00210014576	lncRNA gene	Chr1:134742329-134783274 (-)
DBA/2J	ENSMUSG00185033779	lncRNA gene	Chr1:139099773-139140639 (-)
FVB/NJ	ENSMUSG00205002787	lncRNA gene	Chr1:134065702-134106574 (-)
JF1/MsJ	ENSUMUG00000049823	lncRNA gene	Chr1:138204379-138247565 (-)
LP/J	ENSMUSG00230040380	lncRNA gene	Chr1:138619587-138660438 (-)
NOD/ShiLtJ	ENSMUSG00190002925	lncRNA gene	Chr1:134732551-134773421 (-)
NZO/HlLtJ	ENSMUSG00225020909	lncRNA gene	Chr1:142386738-142427596 (-)
PWK/PhJ	ENSLUMG00010002066	lncRNA gene	Chr1:133824488-133865945 (-)
SPRET/EiJ	ENSMSPG00010012452	lncRNA gene	Chr1:136680820-136720444 (-)
WSB/EiJ	ENSIUOG00005029626	lncRNA gene	Chr1:134530137-134571057 (-)

Homology

• Gene Tree
  Gm26936
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm26936
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47

• Ensembl
  ENSMUSG00000098145 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098145	Ensembl Gene Model | MGI Sequence Detail	51588	C57BL/6J
transcript	ENSMUST00000295956	Ensembl | MGI Sequence Detail	1159	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm26936:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13968	Chr1:137896951-137896981 (-)	47 bp