Gm26901 Gene Detail

Summary

• Symbol
  Gm26901
• Name
  predicted gene, 26901

• Feature Type
  lncRNA gene
• IDs
  MGI:5477395
  NCBI Gene: 102632124
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:7384854-7468544 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2560 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477395	lncRNA gene	Chr1:7384854-7469430 (-)
129S1/SvImJ	ENSMUSG00200003338	lncRNA gene	Chr1:4805617-4821244 (-)
A/J	ENSMUSG00195003246	lncRNA gene	Chr1:4618264-4633902 (-)
AKR/J	ENSMUSG00220003945	lncRNA gene	Chr1:4688284-4736763 (-)
BALB/cJ	ENSMUSG00180009555	lncRNA gene	Chr1:4695593-4711232 (-)
C3H/HeJ	ENSMUSG00175000317	lncRNA gene	Chr1:4554696-4570357 (-)
C57BL/6NJ	ENSMUSG00215004344	lncRNA gene	Chr1:4603768-4652268 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002119	lncRNA gene	Chr1:4965891-5022390 (-)
CBA/J	ENSMUSG00210002077	lncRNA gene	Chr1:4469712-4485375 (-)
DBA/2J	ENSMUSG00185004786	lncRNA gene	Chr1:5498941-5547408 (-)
FVB/NJ	ENSMUSG00205005443	lncRNA gene	Chr1:4767125-4815607 (-)
JF1/MsJ	ENSUMUG00000004854	lncRNA gene	Chr1:4784618-4834645 (-)
LP/J	ENSMUSG00230002489	lncRNA gene	Chr1:5517565-5566053 (-)
NOD/ShiLtJ	ENSMUSG00190001366	lncRNA gene	Chr1:4615725-4631379 (-)
NZO/HlLtJ	ENSMUSG00225000242	lncRNA gene	Chr1:8897625-8946099 (-)
PWK/PhJ	ENSLUMG00010002431	lncRNA gene	Chr1:4356535-4406547 (-)
SPRET/EiJ	ENSMSPG00010014435	lncRNA gene	Chr1:4959397-4980680 (-)
WSB/EiJ	ENSIUOG00005011639	lncRNA gene	Chr1:4584251-4600272 (-)

Homology

• Gene Tree
  Gm26901
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  71
• RefSeq
  12

• Ensembl
  ENSMUSG00000097797 (Evidence)
• NCBI Gene
  102632124

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097797	Ensembl Gene Model | MGI Sequence Detail	83691	C57BL/6J
transcript	ENSMUST00000193428	Ensembl | MGI Sequence Detail	3608	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26901:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10914	Chr1:7467296-7467300 (-)	1,246 bp