Gm26787 Gene Detail

Summary

• Symbol
  Gm26787
• Name
  predicted gene, 26787

• Feature Type
  lncRNA gene
• IDs
  MGI:5477281
  NCBI Gene: 102637672
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:36679183-36693972 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  513 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477281	lncRNA gene	Chr9:36679116-36693989 (+)
129S1/SvImJ	ENSMUSG00200040195	lncRNA gene	Chr9:33661327-33676098 (+)
A/J	ENSMUSG00195050874	lncRNA gene	Chr9:33447884-33462651 (+)
AKR/J	ENSMUSG00220047029	lncRNA gene	Chr9:33525941-33540755 (+)
BALB/cJ	ENSMUSG00180048377	lncRNA gene	Chr9:33576190-33590969 (+)
C3H/HeJ	ENSMUSG00175049647	lncRNA gene	Chr9:33577293-33592066 (+)
C57BL/6NJ	ENSMUSG00215037164	lncRNA gene	Chr9:33584840-33599656 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004181	antisense lncRNA gene	Chr9:32919537-32933987 (+)
CAST/EiJ	ENSTCUG00005045057	lncRNA gene	Chr9:33539258-33553827 (+)
CBA/J	ENSMUSG00210046650	lncRNA gene	Chr9:33565802-33585228 (+)
DBA/2J	ENSMUSG00185038016	lncRNA gene	Chr9:33675383-33690202 (+)
FVB/NJ	ENSMUSG00205046291	lncRNA gene	Chr9:33940547-33955324 (+)
JF1/MsJ	ENSUMUG00000048543	lncRNA gene	Chr9:33776116-33789662 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190033212	lncRNA gene	Chr9:33707455-33722272 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010048300	lncRNA gene	Chr9:33714343-33727908 (+)
SPRET/EiJ	ENSMSPG00010035387	lncRNA gene	Chr9:34286259-34300629 (+)
WSB/EiJ	ENSIUOG00005046001	lncRNA gene	Chr9:33191946-33206625 (+)

Homology

• Gene Tree
  Gm26787
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  16
• Gene trapped
  16
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000096993 (Evidence)
• NCBI Gene
  102637672

Representative Sequences			Length	Strain/Species
genomic	102637672	NCBI Gene Model | MGI Sequence Detail	14790	C57BL/6J
transcript	NR_166654	RefSeq | MGI Sequence Detail	607	ZRU/MplStud

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26787:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84370	Chr9:36679177-36679188 (+)	0 bp
Tssr84371	Chr9:36679308-36679327 (+)	135 bp