Gm26781 Gene Detail

Summary

• Symbol
  Gm26781
• Name
  predicted gene, 26781

• Feature Type
  lncRNA gene
• IDs
  MGI:5477275
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:136187145-136202144 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  406 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477275	lncRNA gene	Chr1:136187145-136202144 (+)
129S1/SvImJ	ENSMUSG00200008919	lncRNA gene	Chr1:133811526-133826522 (+)
A/J	ENSMUSG00195017596	lncRNA gene	Chr1:132874715-132889716 (+)
AKR/J	ENSMUSG00220003514	lncRNA gene	Chr1:132765571-132780570 (+)
BALB/cJ	ENSMUSG00180011516	lncRNA gene	Chr1:133415257-133430256 (+)
C3H/HeJ	ENSMUSG00175006972	lncRNA gene	Chr1:133118746-133133745 (+)
C57BL/6NJ	ENSMUSG00215019765	lncRNA gene	Chr1:133117105-133132104 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002407	antisense lncRNA gene	Chr1:127876134-127892151 (+)
CAST/EiJ	ENSTCUG00005039037	lncRNA gene	Chr1:132051136-132066138 (+)
CBA/J	ENSMUSG00210014393	lncRNA gene	Chr1:133049060-133064059 (+)
DBA/2J	ENSMUSG00185033940	lncRNA gene	Chr1:137426323-137441308 (+)
FVB/NJ	ENSMUSG00205002510	lncRNA gene	Chr1:132384794-132399793 (+)
JF1/MsJ	ENSUMUG00000051749	lncRNA gene	Chr1:136553616-136568645 (+)
LP/J	ENSMUSG00230039742	lncRNA gene	Chr1:136949860-136964859 (+)
NOD/ShiLtJ	ENSMUSG00190003128	lncRNA gene	Chr1:133063076-133078075 (+)
NZO/HlLtJ	ENSMUSG00225020310	lncRNA gene	Chr1:140716843-140731842 (+)
PWK/PhJ	ENSLUMG00010002168	lncRNA gene	Chr1:132177366-132192416 (+)
SPRET/EiJ	ENSMSPG00010012770	lncRNA gene	Chr1:134978122-134993174 (+)
WSB/EiJ	ENSIUOG00005030096	lncRNA gene	Chr1:132832775-132847738 (+)

Homology

• Gene Tree
  Gm26781
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm26781
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000097433 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097433	Ensembl Gene Model | MGI Sequence Detail	15000	C57BL/6J
transcript	ENSMUST00000181385	Ensembl | MGI Sequence Detail	1477	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm26781:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9053	Chr1:136187135-136187163 (+)	4 bp
Tssr9054	Chr1:136187170-136187200 (+)	40 bp
Tssr9055	Chr1:136187395-136187426 (+)	266 bp