Gm26754 Gene Detail

Summary

• Symbol
  Gm26754
• Name
  predicted gene, 26754

• Feature Type
  lncRNA gene
• IDs
  MGI:5477248
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:66392016-66616129 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1135 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477248	lncRNA gene	Chr13:66392016-66616129 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195031217	lncRNA gene	Chr13:61855853-61869799 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180029936	lncRNA gene	Chr13:62369905-62383845 (+)
C3H/HeJ	ENSMUSG00175008908	lncRNA gene	Chr13:62626074-62690261 (+)
C57BL/6NJ	ENSMUSG00215012702	lncRNA gene	Chr13:61982955-61994898 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012226	lncRNA gene	Chr13:62307488-62356270 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185010721	lncRNA gene	Chr13:65528221-65540153 (-)
DBA/2J	ENSMUSG00185010685	lncRNA gene	Chr13:65174832-65186971 (+)
DBA/2J	ENSMUSG00185009788	lncRNA gene	Chr13:63437778-63451547 (+)
DBA/2J	ENSMUSG00185009791	lncRNA gene	Chr13:64304382-64434086 (-)
FVB/NJ	ENSMUSG00205033940	lncRNA gene	Chr13:61382056-61437887 (+)
JF1/MsJ	ENSUMUG00000038623	lncRNA gene	Chr13:64081111-64142504 (+)
JF1/MsJ	ENSUMUG00000038553	lncRNA gene	Chr13:64550463-64570931 (+)
JF1/MsJ	ENSUMUG00000044304	lncRNA gene	Chr13:64314276-64375501 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190042762	lncRNA gene	Chr13:61951075-61965020 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010012540	lncRNA gene	Chr13:61515510-61527953 (+)
SPRET/EiJ	ENSMSPG00010036343	lncRNA gene	Chr13:61802877-61816632 (-)
SPRET/EiJ	ENSMSPG00010036396	lncRNA gene	Chr13:62142601-62154739 (-)
WSB/EiJ	ENSIUOG00005024291	lncRNA gene	Chr13:60636805-60648939 (+)
WSB/EiJ	ENSIUOG00005024302	lncRNA gene	Chr13:61020651-61034413 (-)

Homology

• Gene Tree
  Gm26754
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  2 involving Gm26754
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46

• Ensembl
  ENSMUSG00000114616 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114616	Ensembl Gene Model | MGI Sequence Detail	224114	C57BL/6J
transcript	ENSMUST00000317639	Ensembl | MGI Sequence Detail	1562	Not Applicable

References

• Summaries
  All 5

  Phenotypes 4
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:370032 Takeda I, et al., Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes Cells. 2021 Nov;26(11):874-890

TSS for Gm26754:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120236	Chr13:66589337-66589349 (+)	197,327 bp