Gm26709 Gene Detail

Summary

• Symbol
  Gm26709
• Name
  predicted gene, 26709

• Feature Type
  lncRNA gene
• IDs
  MGI:5477203
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr12:72992581-73012705 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  646 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477203	lncRNA gene	Chr12:72992581-73012705 (+)
129S1/SvImJ	ENSMUSG00200032387	lncRNA gene	Chr12:64894831-64914959 (+)
A/J	ENSMUSG00195015146	lncRNA gene	Chr12:67605260-67625404 (+)
AKR/J	ENSMUSG00220015445	lncRNA gene	Chr12:65413452-65433583 (+)
BALB/cJ	ENSMUSG00180033677	lncRNA gene	Chr12:66604264-66624411 (+)
C3H/HeJ	ENSMUSG00175029133	lncRNA gene	Chr12:69731092-69751240 (+)
C57BL/6NJ	ENSMUSG00215035446	lncRNA gene	Chr12:65984691-66004816 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034639	sense overlapping lncRNA gene	Chr12:67558138-67578236 (+)
CAST/EiJ	ENSTCUG00005036267	lncRNA gene	Chr12:65913908-65934023 (+)
CBA/J	ENSMUSG00210031163	lncRNA gene	Chr12:66168309-66188451 (+)
DBA/2J	ENSMUSG00185004820	lncRNA gene	Chr12:68074217-68094345 (+)
FVB/NJ	ENSMUSG00205036022	lncRNA gene	Chr12:65804371-65824546 (+)
JF1/MsJ	ENSUMUG00000026748	lncRNA gene	Chr12:72029786-72049961 (+)
LP/J	ENSMUSG00230022095	lncRNA gene	Chr12:75030795-75050925 (+)
NOD/ShiLtJ	ENSMUSG00190012658	lncRNA gene	Chr12:65229049-65249424 (+)
NZO/HlLtJ	ENSMUSG00225038814	lncRNA gene	Chr12:77082271-77102397 (+)
PWK/PhJ	ENSLUMG00010032167	lncRNA gene	Chr12:66097686-66117843 (+)
SPRET/EiJ	ENSMSPG00010029380	lncRNA gene	Chr12:67802970-67823388 (+)
WSB/EiJ	ENSIUOG00005012939	lncRNA gene	Chr12:65854019-65874150 (+)

Homology

• Gene Tree
  Gm26709
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm26709
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000097010 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097010	Ensembl Gene Model | MGI Sequence Detail	20125	C57BL/6J
transcript	ENSMUST00000223049	Ensembl | MGI Sequence Detail	819	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26709:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113771	Chr12:72992406-72992417 (+)	-169 bp
Tssr113772	Chr12:72992452-72992462 (+)	-124 bp
Tssr113773	Chr12:72992464-72992471 (+)	-113 bp
Tssr113774	Chr12:72992474-72992484 (+)	-102 bp
Tssr113775	Chr12:72992537-72992548 (+)	-38 bp
Tssr113776	Chr12:72992561-72992574 (+)	-13 bp