Gm26693 Gene Detail

Summary

• Symbol
  Gm26693
• Name
  predicted gene, 26693

• Feature Type
  lncRNA gene
• IDs
  MGI:5477187
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:33029102-33040671 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  429 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477187	lncRNA gene	Chr17:33029102-33040671 (+)
129S1/SvImJ	ENSMUSG00200054299	lncRNA gene	Chr17:28704305-28715863 (+)
A/J	ENSMUSG00195054580	lncRNA gene	Chr17:29643204-29654828 (+)
AKR/J	ENSMUSG00220053721	lncRNA gene	Chr17:28671272-28682894 (+)
BALB/cJ	ENSMUSG00180050753	lncRNA gene	Chr17:28978433-28990001 (+)
C3H/HeJ	ENSMUSG00175053778	lncRNA gene	Chr17:28552301-28563923 (+)
C57BL/6NJ	ENSMUSG00215054624	lncRNA gene	Chr17:28549404-28560962 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003012	antisense lncRNA gene	Chr17:28872593-28884610 (+)
CAST/EiJ	ENSTCUG00005051388	lncRNA gene	Chr17:29566905-29578676 (+)
CBA/J	ENSMUSG00210051254	lncRNA gene	Chr17:28379247-28390869 (+)
DBA/2J	ENSMUSG00185054241	lncRNA gene	Chr17:30990358-31001922 (+)
FVB/NJ	ENSMUSG00205053772	lncRNA gene	Chr17:28875696-28887272 (+)
JF1/MsJ	ENSUMUG00000057909	lncRNA gene	Chr17:30289657-30301202 (+)
LP/J	ENSMUSG00230054658	lncRNA gene	Chr17:32102774-32114336 (+)
NOD/ShiLtJ	ENSMUSG00190054471	lncRNA gene	Chr17:28490139-28501713 (+)
NZO/HlLtJ	ENSMUSG00225054914	lncRNA gene	Chr17:34139776-34151336 (+)
PWK/PhJ	ENSLUMG00010053613	lncRNA gene	Chr17:28132739-28144261 (+)
SPRET/EiJ	ENSMSPG00010050139	lncRNA gene	Chr17:29233019-29244467 (+)
WSB/EiJ	ENSIUOG00005052292	lncRNA gene	Chr17:29284584-29296321 (+)

Homology

• Gene Tree
  Gm26693
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000097030 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097030	Ensembl Gene Model | MGI Sequence Detail	11570	C57BL/6J
transcript	ENSMUST00000181318	Ensembl | MGI Sequence Detail	1021	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26693:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143739	Chr17:33029091-33029121 (+)	4 bp
Tssr5087	Chr17:33030565-33030567 (+)	1,464 bp