Gm26684 Gene Detail

Summary

• Symbol
  Gm26684
• Name
  predicted gene, 26684

• Feature Type
  lncRNA gene
• IDs
  MGI:5477178
  NCBI Gene: 102638507
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:54816344-54834101 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  495 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477178	lncRNA gene	Chr15:54815466-54834615 (+)
129S1/SvImJ	ENSMUSG00200029218	lncRNA gene	Chr15:51797990-51816998 (+)
A/J	ENSMUSG00195006265	lncRNA gene	Chr15:51833975-51853043 (+)
AKR/J	ENSMUSG00220021696	lncRNA gene	Chr15:51841547-51860609 (+)
BALB/cJ	ENSMUSG00180009095	lncRNA gene	Chr15:51780974-51799994 (+)
C3H/HeJ	ENSMUSG00175005388	lncRNA gene	Chr15:52039552-52058571 (+)
C57BL/6NJ	ENSMUSG00215012511	lncRNA gene	Chr15:51778875-51797902 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005091	lincRNA gene	Chr15:49113471-49124423 (+)
CAST/EiJ	ENSTCUG00005007253	lncRNA gene	Chr15:51670335-51689379 (+)
CBA/J	ENSMUSG00210007367	lncRNA gene	Chr15:51866747-51885763 (+)
DBA/2J	ENSMUSG00185026837	lncRNA gene	Chr15:51842586-51861655 (+)
FVB/NJ	ENSMUSG00205006759	lncRNA gene	Chr15:51687591-51706659 (+)
JF1/MsJ	ENSUMUG00000032088	lncRNA gene	Chr15:51663171-51682297 (+)
LP/J	ENSMUSG00230008911	lncRNA gene	Chr15:55159510-55178519 (+)
NOD/ShiLtJ	ENSMUSG00190018065	lncRNA gene	Chr15:51840242-51859258 (+)
NZO/HlLtJ	ENSMUSG00225028848	lncRNA gene	Chr15:55486473-55505489 (+)
PWK/PhJ	ENSLUMG00010028182	lncRNA gene	Chr15:51903831-51922919 (+)
SPRET/EiJ	ENSMSPG00010024185	lncRNA gene	Chr15:52979777-52998404 (+)
WSB/EiJ	ENSIUOG00005006302	lncRNA gene	Chr15:51869122-51888172 (+)

Homology

• Gene Tree
  Gm26684
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  3
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm26684
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  62
• RefSeq
  1

• Ensembl
  ENSMUSG00000097286 (Evidence)
• NCBI Gene
  102638507

Representative Sequences			Length	Strain/Species
genomic	102638507	NCBI Gene Model | MGI Sequence Detail	17758	C57BL/6J
transcript	NR_155354	RefSeq | MGI Sequence Detail	1136	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 11
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:155838 Katayama K, et al., Characterization of the chromosomal inversion associated with the Koa mutation in the mouse revealed the cause of skeletal abnormalities. BMC Genet. 2009;10:60

TSS for Gm26684:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131286	Chr15:54816335-54816371 (+)	9 bp