Gm26642 Gene Detail

Summary

• Symbol
  Gm26642
• Name
  predicted gene, 26642

• Feature Type
  lncRNA gene
• IDs
  MGI:5477136
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:135176299-135194181 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  507 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477136	lncRNA gene	Chr1:135176299-135194181 (+)
129S1/SvImJ	ENSMUSG00200008527	lncRNA gene	Chr1:132788946-132806744 (+)
A/J	ENSMUSG00195045246	lncRNA gene	Chr1:131863581-131881363 (+)
AKR/J	ENSMUSG00220050335	lncRNA gene	Chr1:131740753-131758568 (+)
BALB/cJ	ENSMUSG00180038506	lncRNA gene	Chr1:132404147-132422028 (+)
C3H/HeJ	ENSMUSG00175047444	lncRNA gene	Chr1:132107748-132125536 (+)
C57BL/6NJ	ENSMUSG00215045921	lncRNA gene	Chr1:132105959-132123844 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002403	antisense lncRNA gene	Chr1:126851197-126869268 (+)
CAST/EiJ	ENSTCUG00005039282	lncRNA gene	Chr1:131024582-131042484 (+)
CBA/J	ENSMUSG00210028939	lncRNA gene	Chr1:132038162-132055941 (+)
DBA/2J	ENSMUSG00185032485	lncRNA gene	Chr1:136411931-136429743 (+)
FVB/NJ	ENSMUSG00205046248	lncRNA gene	Chr1:131373841-131391624 (+)
JF1/MsJ	ENSUMUG00000051275	lncRNA gene	Chr1:135537744-135555639 (+)
LP/J	ENSMUSG00230039875	lncRNA gene	Chr1:135938868-135956751 (+)
NOD/ShiLtJ	ENSMUSG00190047513	lncRNA gene	Chr1:132052258-132070038 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010027827	lncRNA gene	Chr1:131162016-131179820 (+)
SPRET/EiJ	ENSMSPG00010012533	lncRNA gene	Chr1:133962202-133979953 (+)
WSB/EiJ	ENSIUOG00005048601	lncRNA gene	Chr1:131795522-131813304 (+)

Homology

• Gene Tree
  Gm26642
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  2
• Gene trapped
  7
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm26642
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097680 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097680	Ensembl Gene Model | MGI Sequence Detail	17883	C57BL/6J
transcript	ENSMUST00000180981	Ensembl | MGI Sequence Detail	2782	Not Applicable

References

• Summaries
  All 9

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9