Gm26641 Gene Detail

Summary

• Symbol
  Gm26641
• Name
  predicted gene, 26641

• Feature Type
  lncRNA gene
• IDs
  MGI:5477135
  NCBI Gene: 102638632
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:171250753-171264890 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  496 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477135	lncRNA gene	Chr1:171250748-171266013 (-)
129S1/SvImJ	ENSMUSG00200047674	lncRNA gene	Chr1:168733429-168747415 (-)
A/J	ENSMUSG00195049095	lncRNA gene	Chr1:168084629-168098480 (-)
AKR/J	ENSMUSG00220033759	lncRNA gene	Chr1:167835063-167849034 (-)
BALB/cJ	ENSMUSG00180046710	lncRNA gene	Chr1:168373695-168387683 (-)
C3H/HeJ	ENSMUSG00175049209	lncRNA gene	Chr1:168384763-168398750 (-)
C57BL/6NJ	ENSMUSG00215044858	lncRNA gene	Chr1:168207727-168221909 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047126	lncRNA gene	Chr1:166718370-166732404 (-)
CBA/J	ENSMUSG00210044331	lncRNA gene	Chr1:168261922-168275767 (-)
DBA/2J	ENSMUSG00185032353	lncRNA gene	Chr1:172575867-172589711 (-)
FVB/NJ	ENSMUSG00205042535	lncRNA gene	Chr1:167270970-167284941 (-)
JF1/MsJ	ENSUMUG00000012192	lncRNA gene	Chr1:171704587-171718761 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190043141	lncRNA gene	Chr1:168056833-168070761 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035278	lncRNA gene	Chr1:167051400-167065247 (-)
SPRET/EiJ	ENSMSPG00010048787	lncRNA gene	Chr1:170587425-170600426 (-)
WSB/EiJ	ENSIUOG00005040036	lncRNA gene	Chr1:167471352-167485337 (-)

Homology

• Gene Tree
  Gm26641
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  20
• Chemically induced (other)
  2
• Gene trapped
  18
• Genomic Mutations
  2 involving Gm26641
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000120584 (Evidence)
• NCBI Gene
  102638632

Representative Sequences			Length	Strain/Species
genomic	102638632	NCBI Gene Model | MGI Sequence Detail	14138	C57BL/6J
transcript	NR_151523	RefSeq | MGI Sequence Detail	958	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm26641:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15045	Chr1:171264856-171264891 (-)	16 bp