Gm26620 Gene Detail

Summary

• Symbol
  Gm26620
• Name
  predicted gene, 26620

• Feature Type
  protein coding gene
• IDs
  MGI:5477114
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:170712634-170713450 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477114	protein coding gene	Chr1:170712634-170713450 (+)
129S1/SvImJ	ENSMUSG00200044257	protein coding gene	Chr1:168201051-168201872 (+)
A/J	ENSMUSG00195046118	protein coding gene	Chr1:167513207-167514028 (+)
AKR/J	ENSMUSG00220027983	protein coding gene	Chr1:167204594-167205410 (+)
BALB/cJ	ENSMUSG00180040306	protein coding gene	Chr1:167772240-167773056 (+)
C3H/HeJ	ENSMUSG00175040442	protein coding gene	Chr1:167856609-167857430 (+)
C57BL/6NJ	ENSMUSG00215042364	protein coding gene	Chr1:167653678-167654494 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014846	protein coding gene	Chr1:161146411-161147232 (+)
CAST/EiJ	ENSTCUG00005044543	protein coding gene	Chr1:166169539-166170356 (+)
CBA/J	ENSMUSG00210032570	protein coding gene	Chr1:167737261-167738077 (+)
DBA/2J	ENSMUSG00185011762	protein coding gene	Chr1:171954237-171955053 (+)
FVB/NJ	ENSMUSG00205028627	protein coding gene	Chr1:166714664-166715485 (+)
JF1/MsJ	ENSUMUG00000004839	protein coding gene	Chr1:171096882-171097698 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190028751	protein coding gene	Chr1:167512494-167513315 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010028365	protein coding gene	Chr1:166502578-166503399 (+)
SPRET/EiJ	ENSMSPG00010045355	protein coding gene	Chr1:170057543-170058363 (+)
WSB/EiJ	ENSIUOG00005036126	protein coding gene	Chr1:166914096-166914917 (+)

Homology

• Gene Tree
  Gm26620
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  2
• Gene trapped
  5
• Genomic Mutations
  2 involving Gm26620
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  2

• Ensembl
  ENSMUSG00000096968 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096968	Ensembl Gene Model | MGI Sequence Detail	817	C57BL/6J
transcript	ENSMUST00000180542	Ensembl | MGI Sequence Detail	817	Not Applicable
polypeptide	ENSMUSP00000137736	Ensembl | MGI Sequence Detail	116	Not Applicable

Protein
Information

• UniProt
  2 Sequences

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26620:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9936	Chr1:170712652-170712667 (+)	26 bp