Gm26577 Gene Detail

Summary

• Symbol
  Gm26577
• Name
  predicted gene, 26577

• Feature Type
  lncRNA gene
• IDs
  MGI:5477071
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:21020983-21030273 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  304 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477071	lncRNA gene	Chr10:21020983-21030273 (+)
129S1/SvImJ	ENSMUSG00200010535	lncRNA gene	Chr10:18015768-18025062 (+)
A/J	ENSMUSG00195006902	lncRNA gene	Chr10:18027857-18037151 (+)
AKR/J	ENSMUSG00220010262	lncRNA gene	Chr10:17933522-17942810 (+)
BALB/cJ	ENSMUSG00180015014	lncRNA gene	Chr10:18152098-18161393 (+)
C3H/HeJ	ENSMUSG00175021312	lncRNA gene	Chr10:18168776-18178057 (+)
C57BL/6NJ	ENSMUSG00215003670	lncRNA gene	Chr10:17975878-17985162 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002494	antisense lncRNA gene	Chr10:17188210-17197249 (+)
CAST/EiJ	ENSTCUG00005030057	lncRNA gene	Chr10:17941626-17950869 (+)
CBA/J	ENSMUSG00210015929	lncRNA gene	Chr10:18105886-18115167 (+)
DBA/2J	ENSMUSG00185007757	lncRNA gene	Chr10:18090884-18100164 (+)
FVB/NJ	ENSMUSG00205019255	lncRNA gene	Chr10:18009024-18018313 (+)
JF1/MsJ	ENSUMUG00000013096	lncRNA gene	Chr10:18147625-18156829 (+)
LP/J	ENSMUSG00230018587	lncRNA gene	Chr10:19749807-19759099 (+)
NOD/ShiLtJ	ENSMUSG00190010868	lncRNA gene	Chr10:18086993-18096286 (+)
NZO/HlLtJ	ENSMUSG00225030579	lncRNA gene	Chr10:24231689-24240968 (+)
PWK/PhJ	ENSLUMG00010015301	lncRNA gene	Chr10:17922680-17931903 (+)
SPRET/EiJ	ENSMSPG00010011308	lncRNA gene	Chr10:18559248-18568285 (+)
WSB/EiJ	ENSIUOG00005023990	lncRNA gene	Chr10:17717582-17727005 (+)

Homology

• Gene Tree
  Gm26577
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm26577
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000097923 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097923	Ensembl Gene Model | MGI Sequence Detail	9291	C57BL/6J
transcript	ENSMUST00000180680	Ensembl | MGI Sequence Detail	2184	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm26577:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3158	Chr10:21021056-21021065 (+)	78 bp
Tssr92620	Chr10:21028737-21028743 (+)	7,757 bp