Gm26560 Gene Detail

Summary

• Symbol
  Gm26560
• Name
  predicted gene, 26560

• Feature Type
  lncRNA gene
• IDs
  MGI:5477054
  NCBI Gene: 102637436
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:38474673-38501721 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  997 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477054	lncRNA gene	Chr5:38474629-38501721 (-)
129S1/SvImJ	ENSMUSG00200033179	lncRNA gene	Chr5:33924605-33928169 (-)
A/J	ENSMUSG00195030717	lncRNA gene	Chr5:33381558-33385122 (-)
AKR/J	ENSMUSG00220002652	lncRNA gene	Chr5:33408331-33411895 (-)
BALB/cJ	ENSMUSG00180026897	lncRNA gene	Chr5:33184368-33187932 (-)
C3H/HeJ	ENSMUSG00175020463	lncRNA gene	Chr5:35168484-35172048 (-)
C57BL/6NJ	ENSMUSG00215005974	lncRNA gene	Chr5:33923172-33926736 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003662	antisense lncRNA gene	Chr5:33174360-33177894 (-)
CAST/EiJ	ENSTCUG00005024503	lncRNA gene	Chr5:33384275-33387834 (-)
CBA/J	ENSMUSG00210005531	lncRNA gene	Chr5:34130442-34134006 (-)
DBA/2J	ENSMUSG00185018408	lncRNA gene	Chr5:36008619-36012183 (-)
FVB/NJ	ENSMUSG00205021427	lncRNA gene	Chr5:32891035-32894599 (-)
JF1/MsJ	ENSUMUG00000003233	lncRNA gene	Chr5:40583931-40587491 (-)
LP/J	ENSMUSG00230002604	lncRNA gene	Chr5:40651675-40655239 (-)
NOD/ShiLtJ	ENSMUSG00190003262	lncRNA gene	Chr5:33195620-33199184 (-)
NZO/HlLtJ	ENSMUSG00225017606	lncRNA gene	Chr5:45802803-45806367 (-)
PWK/PhJ	ENSLUMG00010023709	lncRNA gene	Chr5:33261723-33265283 (-)
SPRET/EiJ	ENSMSPG00010038409	lncRNA gene	Chr5:34501661-34505219 (-)
WSB/EiJ	ENSIUOG00005018464	lncRNA gene	Chr5:36091394-36094958 (-)

Homology

• Gene Tree
  Gm26560
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving Gm26560
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  56
• RefSeq
  9

• Ensembl
  ENSMUSG00000097029 (Evidence)
• NCBI Gene
  102637436

Representative Sequences			Length	Strain/Species
genomic	102637436	NCBI Gene Model | MGI Sequence Detail	27049	C57BL/6J
transcript	XR_868375	RefSeq | MGI Sequence Detail	3386	C57BL/6J

References

• Summaries
  All 22

  Diseases 1

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm26560:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50797	Chr5:38501669-38501671 (-)	51 bp