Gm26553 Gene Detail

Summary

• Symbol
  Gm26553
• Name
  predicted gene, 26553
• Synonyms
  4930459I23Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:5477047
  NCBI Gene: 74690
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:96256903-96264424 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477047	lncRNA gene	Chr3:96247846-96264438 (-)
129S1/SvImJ	ENSMUSG00200045721	lncRNA gene	Chr3:92913258-92921651 (+)
A/J	ENSMUSG00195050783	lncRNA gene	Chr3:93281442-93289913 (+)
A/J	ENSMUSG00195049233	lncRNA gene	Chr3:93249010-93257481 (-)
AKR/J	ENSMUSG00220044641	lncRNA gene	Chr3:91662132-91670621 (+)
AKR/J	ENSMUSG00220043816	lncRNA gene	Chr3:91633702-91642190 (-)
BALB/cJ	ENSMUSG00180042206	lncRNA gene	Chr3:93242970-93251419 (-)
BALB/cJ	ENSMUSG00180045453	lncRNA gene	Chr3:93263238-93271685 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215040373	lncRNA gene	Chr3:93639528-93648019 (+)
C57BL/6NJ	ENSMUSG00215039437	lncRNA gene	Chr3:93611117-93619584 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022035	lncRNA gene	Chr3:93463821-93472312 (+)
CAST/EiJ	ENSTCUG00005021186	lncRNA gene	Chr3:93435415-93443884 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185046524	lncRNA gene	Chr3:93852139-93860606 (-)
DBA/2J	ENSMUSG00185048163	lncRNA gene	Chr3:93880549-93889039 (+)
FVB/NJ	ENSMUSG00205051630	lncRNA gene	Chr3:92501294-92509763 (+)
JF1/MsJ	ENSUMUG00000053159	lncRNA gene	Chr3:92737448-92745925 (+)
JF1/MsJ	ENSUMUG00000048588	lncRNA gene	Chr3:92717877-92726354 (-)
LP/J	ENSMUSG00230046071	lncRNA gene	Chr3:95784462-95792930 (-)
LP/J	ENSMUSG00230047475	lncRNA gene	Chr3:95816893-95825361 (+)
NOD/ShiLtJ	ENSMUSG00190050941	lncRNA gene	Chr3:93978432-93986920 (+)
NOD/ShiLtJ	ENSMUSG00190050526	lncRNA gene	Chr3:93950025-93958491 (-)
NZO/HlLtJ	ENSMUSG00225012325	lncRNA gene	Chr3:98205087-98213536 (-)
NZO/HlLtJ	ENSMUSG00225013061	lncRNA gene	Chr3:98225351-98233797 (+)
PWK/PhJ	ENSLUMG00010030297	lncRNA gene	Chr3:92699478-92707895 (-)
PWK/PhJ	ENSLUMG00010033571	lncRNA gene	Chr3:92730129-92738543 (+)
SPRET/EiJ	ENSMSPG00010045601	lncRNA gene	Chr3:93007560-93016043 (-)
SPRET/EiJ	ENSMSPG00010048454	lncRNA gene	Chr3:93028440-93036917 (+)
WSB/EiJ	ENSIUOG00005032279	lncRNA gene	Chr3:93351084-93359576 (-)
WSB/EiJ	ENSIUOG00005035304	lncRNA gene	Chr3:93379546-93388028 (+)

Homology

• Gene Tree
  Gm26553
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm26553
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  599
• Tissues
  2
• cDNA Data
  3
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  3

• Ensembl
  ENSMUSG00000097807 (Evidence)
• NCBI Gene
  74690

Representative Sequences			Length	Strain/Species
genomic	74690	NCBI Gene Model | MGI Sequence Detail	7522	C57BL/6J
transcript	AK015488	GenBank | ENA | DDBJ | MGI Sequence Detail	1818	C57BL/6J

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1921940

References

• Summaries
  All 13

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582