Gm26549 Gene Detail

Summary

• Symbol
  Gm26549
• Name
  predicted gene, 26549

• Feature Type
  lncRNA gene
• IDs
  MGI:5477043
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:32503761-32517663 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  544 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477043	lncRNA gene	Chr17:32503761-32517663 (+)
129S1/SvImJ	ENSMUSG00200054329	lncRNA gene	Chr17:28183938-28199771 (+)
A/J	ENSMUSG00195054506	lncRNA gene	Chr17:29123198-29139374 (+)
AKR/J	ENSMUSG00220053716	lncRNA gene	Chr17:28151188-28167365 (+)
BALB/cJ	ENSMUSG00180051448	lncRNA gene	Chr17:28458025-28473860 (+)
C3H/HeJ	ENSMUSG00175054179	lncRNA gene	Chr17:28032336-28048498 (+)
C57BL/6NJ	ENSMUSG00215054622	lncRNA gene	Chr17:28021835-28037660 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005198	lincRNA gene	Chr17:28156966-28172071 (+)
CAST/EiJ	ENSTCUG00005052074	lncRNA gene	Chr17:29036330-29052500 (+)
CBA/J	ENSMUSG00210051175	lncRNA gene	Chr17:27859232-27875395 (+)
DBA/2J	ENSMUSG00185055836	lncRNA gene	Chr17:30469958-30485789 (+)
FVB/NJ	ENSMUSG00205053718	lncRNA gene	Chr17:28355191-28371556 (+)
JF1/MsJ	ENSUMUG00000058075	lncRNA gene	Chr17:29771792-29788428 (+)
LP/J	ENSMUSG00230054687	lncRNA gene	Chr17:31582447-31598275 (+)
NOD/ShiLtJ	ENSMUSG00190054321	lncRNA gene	Chr17:27981490-27997860 (+)
NZO/HlLtJ	ENSMUSG00225054936	lncRNA gene	Chr17:33619427-33635253 (+)
PWK/PhJ	ENSLUMG00010053496	lncRNA gene	Chr17:27596970-27613786 (+)
SPRET/EiJ	ENSMSPG00010050678	lncRNA gene	Chr17:28720713-28742217 (+)
WSB/EiJ	ENSIUOG00005052127	lncRNA gene	Chr17:28740410-28756782 (+)

Homology

• Gene Tree
  Gm26549
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  24
• Gene trapped
  24
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000097217 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097217	Ensembl Gene Model | MGI Sequence Detail	13903	C57BL/6J
transcript	ENSMUST00000246789	Ensembl | MGI Sequence Detail	1661	Not Applicable

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26549:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143709	Chr17:32503435-32503458 (+)	-314 bp
Tssr143710	Chr17:32503746-32503783 (+)	4 bp