Gm26542 Gene Detail

Summary

• Symbol
  Gm26542
• Name
  predicted gene, 26542

• Feature Type
  lncRNA gene
• IDs
  MGI:5477036
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:50127780-50179666 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1276 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477036	lncRNA gene	Chr11:50127780-50179666 (+)
129S1/SvImJ	ENSMUSG00200040563	lncRNA gene	Chr11:47106216-47158106 (+)
A/J	ENSMUSG00195036938	lncRNA gene	Chr11:47057031-47108919 (+)
AKR/J	ENSMUSG00220041242	lncRNA gene	Chr11:47247541-47299461 (+)
BALB/cJ	ENSMUSG00180036858	lncRNA gene	Chr11:47118529-47170427 (+)
C3H/HeJ	ENSMUSG00175038663	lncRNA gene	Chr11:47088646-47140516 (+)
C57BL/6NJ	ENSMUSG00215038305	lncRNA gene	Chr11:47015473-47067361 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004735	lincRNA gene	Chr11:45129467-45187067 (+)
CAST/EiJ	ENSTCUG00005045010	lncRNA gene	Chr11:46643880-46698296 (+)
CBA/J	ENSMUSG00210029955	lncRNA gene	Chr11:46944602-46996476 (+)
DBA/2J	ENSMUSG00185028908	lncRNA gene	Chr11:47198793-47250689 (+)
FVB/NJ	ENSMUSG00205038839	lncRNA gene	Chr11:46986406-47038297 (+)
JF1/MsJ	ENSUMUG00000040792	lncRNA gene	Chr11:47461521-47512522 (+)
LP/J	ENSMUSG00230034134	lncRNA gene	Chr11:48337943-48389826 (+)
NOD/ShiLtJ	ENSMUSG00190045051	lncRNA gene	Chr11:47203214-47255093 (+)
NZO/HlLtJ	ENSMUSG00225036116	lncRNA gene	Chr11:50325990-50377877 (+)
PWK/PhJ	ENSLUMG00010035428	lncRNA gene	Chr11:46980751-47033024 (+)
SPRET/EiJ	ENSMSPG00010021167	lncRNA gene	Chr11:47631095-47684186 (+)
WSB/EiJ	ENSIUOG00005041349	lncRNA gene	Chr11:47005647-47057539 (+)

Homology

• Gene Tree
  Gm26542
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  8
• Genomic Mutations
  1 involving Gm26542
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000097887 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097887	Ensembl Gene Model | MGI Sequence Detail	51887	C57BL/6J
transcript	ENSMUST00000180443	Ensembl | MGI Sequence Detail	1235	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26542:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101237	Chr11:50127677-50127697 (+)	-93 bp
Tssr101238	Chr11:50127714-50127744 (+)	-51 bp
Tssr101239	Chr11:50127829-50127841 (+)	55 bp
Tssr101240	Chr11:50143265-50143281 (+)	15,493 bp