Gm26520 Gene Detail

Summary

• Symbol
  Gm26520
• Name
  predicted gene, 26520

• Feature Type
  lncRNA gene
• IDs
  MGI:5477014
  NCBI Gene: 105244630
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:3393816-3407153 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477014	lncRNA gene	Chr12:3393725-3407153 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005338	lincRNA gene	Chr12:132906-148305 (-)
A/J	MGP_AJ_G0005321	lincRNA gene	Chr12:205601-219101 (-)
AKR/J	MGP_AKRJ_G0005301	lincRNA gene	Chr12:324612-338055 (-)
BALB/cJ	MGP_BALBcJ_G0005303	lincRNA gene	Chr12:202267-216970 (-)
C3H/HeJ	MGP_C3HHeJ_G0005252	lincRNA gene	Chr12:110236-123507 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005456	lincRNA gene	Chr12:144813-159826 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004844	lincRNA gene	Chr12:141961-155037 (-)
CAST/EiJ	MGP_CASTEiJ_G0005199	lincRNA gene	Chr12:165226-179815 (-)
CBA/J	MGP_CBAJ_G0005241	lincRNA gene	Chr12:348539-365780 (-)
DBA/2J	MGP_DBA2J_G0005259	lincRNA gene	Chr12:159762-173024 (-)
FVB/NJ	MGP_FVBNJ_G0005284	lincRNA gene	Chr12:177498-190462 (-)
LP/J	MGP_LPJ_G0005340	lincRNA gene	Chr12:153487-167603 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005266	lincRNA gene	Chr12:168712-194536 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005459	lincRNA gene	Chr12:106056-120012 (-)
PWK/PhJ	MGP_PWKPhJ_G0005148	lincRNA gene	Chr12:167969-181438 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005068	lincRNA gene	Chr12:174016-189662 (-)
WSB/EiJ	MGP_WSBEiJ_G0005247	lincRNA gene	Chr12:141858-157706 (-)

Homology

• Gene Tree
  Gm26520
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097429 (Evidence)
• NCBI Gene
  105244630

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097429	Ensembl Gene Model | MGI Sequence Detail	13338	C57BL/6J
transcript	ENSMUST00000180719	Ensembl | MGI Sequence Detail	1423	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm26520:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115604	Chr12:3407037-3407055 (-)	107 bp
Tssr115603	Chr12:3407012-3407026 (-)	134 bp
Tssr115602	Chr12:3406961-3406980 (-)	182 bp
Tssr115601	Chr12:3397796-3397799 (-)	9,355 bp