Gm26172 Gene Detail

Summary

• Symbol
  Gm26172
• Name
  predicted gene, 26172

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:5455949
  NCBI Gene: 115485917
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:19106747-19106880 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  17 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455949	snoRNA gene	Chr13:19106747-19106888 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038691	snoRNA gene	Chr13:16045773-16045906 (+)
A/J	MGP_AJ_G0038683	snoRNA gene	Chr13:15832028-15832161 (+)
AKR/J	MGP_AKRJ_G0038618	snoRNA gene	Chr13:16029843-16029976 (+)
BALB/cJ	MGP_BALBcJ_G0038668	snoRNA gene	Chr13:15790041-15790174 (+)
C3H/HeJ	MGP_C3HHeJ_G0038330	snoRNA gene	Chr13:16149511-16149644 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039213	snoRNA gene	Chr13:16733127-16733260 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035966	snoRNA gene	Chr13:14288932-14289065 (+)
CAST/EiJ	MGP_CASTEiJ_G0037471	snoRNA gene	Chr13:15888946-15889079 (+)
CBA/J	MGP_CBAJ_G0038302	snoRNA gene	Chr13:17297626-17297759 (+)
DBA/2J	MGP_DBA2J_G0038491	snoRNA gene	Chr13:15404837-15404970 (+)
FVB/NJ	MGP_FVBNJ_G0038444	snoRNA gene	Chr13:15098111-15098244 (+)
LP/J	MGP_LPJ_G0038530	snoRNA gene	Chr13:16338662-16338795 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038442	snoRNA gene	Chr13:17670644-17670777 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039316	snoRNA gene	Chr13:15827442-15827575 (+)
PWK/PhJ	MGP_PWKPhJ_G0037157	snoRNA gene	Chr13:15465099-15465232 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036915	snoRNA gene	Chr13:14971557-14971690 (+)
WSB/EiJ	MGP_WSBEiJ_G0037701	snoRNA gene	Chr13:15865655-15865788 (+)

Homology

• Gene Tree
  Gm26172
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm26172
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000089046 (Evidence)
• NCBI Gene
  115485917

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089046	Ensembl Gene Model | MGI Sequence Detail	134	C57BL/6J
transcript	ENSMUST00000158421	Ensembl | MGI Sequence Detail	134	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:71411 Arkell RM, et al., Genetic, physical, and phenotypic characterization of the Del(13)Svea36H mouse. Mamm Genome. 2001 Sep;12(9):687-94
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44