Gm25395 MGI Mouse Gene Detail - MGI:5455172

Sequence Map

Chr1:87704660-87704931 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455172	snoRNA gene	Chr1:87704660-87704931 (+)
129S1/SvImJ	ENSMUSG00200038422	snoRNA gene	Chr1:84930601-84930872 (+)
A/J	ENSMUSG00195033449	snoRNA gene	Chr1:84491102-84491373 (+)
AKR/J	ENSMUSG00220045162	snoRNA gene	Chr1:84624448-84624719 (+)
BALB/cJ	ENSMUSG00180017291	snoRNA gene	Chr1:84793874-84794145 (+)
C3H/HeJ	ENSMUSG00175001689	snoRNA gene	Chr1:84672807-84673078 (+)
C57BL/6NJ	ENSMUSG00215036649	snoRNA gene	Chr1:84595786-84596057 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034363	snoRNA gene	Chr1:80258257-80258527 (+)
CAST/EiJ	ENSTCUG00005008049	snoRNA gene	Chr1:84224273-84224544 (+)
CBA/J	ENSMUSG00210012443	snoRNA gene	Chr1:84518109-84518380 (+)
DBA/2J	ENSMUSG00185016903	snoRNA gene	Chr1:88975410-88975681 (+)
FVB/NJ	ENSMUSG00205045471	snoRNA gene	Chr1:83925161-83925432 (+)
JF1/MsJ	ENSUMUG00000019711	snoRNA gene	Chr1:87729320-87729591 (+)
LP/J	ENSMUSG00230022531	snoRNA gene	Chr1:88260114-88260385 (+)
NOD/ShiLtJ	ENSMUSG00190033263	snoRNA gene	Chr1:84565965-84566236 (+)
NZO/HlLtJ	ENSMUSG00225004781	snoRNA gene	Chr1:92162845-92163116 (+)
PWK/PhJ	ENSLUMG00010047551	snoRNA gene	Chr1:84116385-84116656 (+)
SPRET/EiJ	ENSMSPG00010047000	snoRNA gene	Chr1:86139558-86139829 (+)
WSB/EiJ	ENSIUOG00005041473	snoRNA gene	Chr1:84153710-84153981 (+)

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Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	115485773	NCBI Gene Model \| MGI Sequence Detail	272	C57BL/6J	± kb
	transcript	XR_004936776	RefSeq \| MGI Sequence Detail	272	C57BL/6J

Summaries

All 6

Gene Ontology 1

Phenotypes 1
Earliest

J:376037 Yang Z, et al., Promotion of TLR7-MyD88-dependent inflammation and autoimmunity in mice through stem-loop changes in Lnc-Atg16l1. Nat Commun. 2024 Nov 25;15(1):10224

TSS for Gm25395:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7893	Chr1:87704658-87704663 (+)	1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24