Gm25211 Gene Detail

Summary

• Symbol
  Gm25211
• Name
  predicted gene, 25211

• Feature Type
  snRNA gene
• IDs
  MGI:5454988
  NCBI Gene: 115490323
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr5:87064075-87064181 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  45 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454988	snRNA gene	Chr5:87064075-87064181 (-)
129S1/SvImJ	ENSMUSG00200009230	snRNA gene	Chr5:82804056-82804162 (-)
A/J	ENSMUSG00195027052	snRNA gene	Chr5:81965416-81965522 (-)
AKR/J	ENSMUSG00220027294	snRNA gene	Chr3:116148954-116149060 (+)
AKR/J	ENSMUSG00220012524	snRNA gene	Chr5:82099332-82099438 (-)
BALB/cJ	ENSMUSG00180020536	snRNA gene	Chr19:57794156-57794258 (-)
BALB/cJ	ENSMUSG00180028341	snRNA gene	Chr5:81795953-81796059 (-)
C3H/HeJ	ENSMUSG00175044877	snRNA gene	Chr5:83874067-83874173 (-)
C3H/HeJ	ENSMUSG00175038229	snRNA gene	ChrX:61707832-61707938 (+)
C57BL/6NJ	ENSMUSG00215036451	snRNA gene	Chr5:82658472-82658578 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038107	snRNA gene	Chr5:81485908-81485909 (-)
CBA/J	ENSMUSG00210006658	snRNA gene	Chr5:82692891-82692997 (-)
DBA/2J	ENSMUSG00185040285	snRNA gene	Chr5:84612040-84612146 (-)
FVB/NJ	ENSMUSG00205001161	snRNA gene	Chr5:81496858-81496964 (-)
JF1/MsJ	ENSUMUG00000001250	snRNA gene	Chr5:89051903-89052009 (-)
LP/J	ENSMUSG00230001692	snRNA gene	Chr5:89334009-89334115 (-)
NOD/ShiLtJ	ENSMUSG00190043828	snRNA gene	Chr5:81554214-81554320 (-)
NZO/HlLtJ	ENSMUSG00225009813	snRNA gene	Chr5:94358580-94358686 (-)
PWK/PhJ	ENSLUMG00010030540	snRNA gene	Chr5:81561895-81562001 (-)
SPRET/EiJ	ENSMSPG00010036701	snRNA gene	Chr5:83760099-83760100 (-)
WSB/EiJ	ENSIUOG00005030282	snRNA gene	Chr5:84515727-84515833 (-)
WSB/EiJ	ENSIUOG00005013677	snRNA gene	Chr16:41709148-41709254 (+)

Homology

• Gene Tree
  Gm25211
  

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000119825 (Evidence)
• NCBI Gene
  115490323

Representative Sequences			Length	Strain/Species
genomic	115490323	NCBI Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	XR_004942875	RefSeq | MGI Sequence Detail	107	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm25211:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51563	Chr5:87065326-87065342 (-)	-1,153 bp
Tssr51562	Chr5:87065174-87065187 (-)	-1,000 bp
Tssr51561	Chr5:87065140-87065152 (-)	-965 bp
Tssr51560	Chr5:87064899-87064903 (-)	-720 bp
Tssr51559	Chr5:87064889-87064894 (-)	-711 bp
Tssr1521	Chr5:87064858-87064863 (-)	-680 bp
Tssr51558	Chr5:87064836-87064846 (-)	-660 bp