Gm25179 Gene Detail

Summary

• Symbol
  Gm25179
• Name
  predicted gene, 25179

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5454956
  NCBI Gene: 115488721
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:35055209-35055293 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454956	snRNA gene	Chr16:35055166-35055293 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037604	snRNA gene	Chr16:92347874-92347956 (-)
A/J	MGP_AJ_G0037602	snRNA gene	Chr16:88036760-88036842 (-)
AKR/J	MGP_AKRJ_G0037538	snRNA gene	Chr16:90686930-90687012 (-)
BALB/cJ	MGP_BALBcJ_G0037586	snRNA gene	Chr16:88553810-88553892 (-)
C3H/HeJ	MGP_C3HHeJ_G0037263	snRNA gene	Chr16:91252763-91252845 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0038108	snRNA gene	Chr16:95338942-95339024 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035046	snRNA gene	Chr16:85739636-85739718 (-)
CAST/EiJ	MGP_CASTEiJ_G0036427	snRNA gene	Chr16:91819334-91819416 (-)
CBA/J	MGP_CBAJ_G0037234	snRNA gene	Chr16:99389263-99389345 (-)
DBA/2J	MGP_DBA2J_G0037414	snRNA gene	Chr16:87935953-87936035 (-)
FVB/NJ	MGP_FVBNJ_G0037360	snRNA gene	Chr16:87064666-87064748 (-)
LP/J	MGP_LPJ_G0037465	snRNA gene	Chr16:92058746-92058828 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037374	snRNA gene	Chr16:103969298-103969380 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038219	snRNA gene	Chr16:91200579-91200661 (-)
PWK/PhJ	MGP_PWKPhJ_G0036118	snRNA gene	Chr16:88113689-88113771 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035906	snRNA gene	Chr16:90757674-90757756 (-)
WSB/EiJ	MGP_WSBEiJ_G0036643	snRNA gene	Chr16:91450061-91450143 (-)

Homology

• Gene Tree
  Gm25179
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00002075911 (Evidence)
• NCBI Gene
  115488721

Representative Sequences			Length	Strain/Species
genomic	115488721	NCBI Gene Model | MGI Sequence Detail	85	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm25179:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140892	Chr16:35055290-35055296 (-)	0 bp