Gm24635 Gene Detail

Summary

• Symbol
  Gm24635
• Name
  predicted gene, 24635

• Feature Type
  snRNA gene
• IDs
  MGI:5454412
  NCBI Gene: 115488240
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:80306782-80306909 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454412	snRNA gene	Chr13:80306782-80306917 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037438	snRNA gene	Chr13:80842851-80842978 (+)
A/J	MGP_AJ_G0037433	snRNA gene	Chr13:78042023-78042150 (+)
AKR/J	MGP_AKRJ_G0037372	snRNA gene	Chr13:80381017-80381144 (+)
BALB/cJ	MGP_BALBcJ_G0037419	snRNA gene	Chr13:78579432-78579559 (+)
C3H/HeJ	MGP_C3HHeJ_G0037096	snRNA gene	Chr13:80079964-80080091 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037934	snRNA gene	Chr13:83488798-83488925 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034914	snRNA gene	Chr13:74588302-74588430 (+)
CAST/EiJ	MGP_CASTEiJ_G0036270	snRNA gene	Chr13:79205857-79205984 (+)
CBA/J	MGP_CBAJ_G0037069	snRNA gene	Chr13:86708825-86708952 (+)
DBA/2J	MGP_DBA2J_G0037248	snRNA gene	Chr13:77715121-77715248 (+)
FVB/NJ	MGP_FVBNJ_G0037193	snRNA gene	Chr13:76810588-76810715 (+)
LP/J	MGP_LPJ_G0037298	snRNA gene	Chr13:81079598-81079725 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037211	snRNA gene	Chr13:85438292-85438419 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038051	snRNA gene	Chr13:79745895-79746022 (+)
PWK/PhJ	MGP_PWKPhJ_G0035964	snRNA gene	Chr13:76601551-76601678 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035756	snRNA gene	Chr13:76006156-76006285 (+)
WSB/EiJ	MGP_WSBEiJ_G0036482	snRNA gene	Chr13:80198870-80198997 (+)

Homology

• Gene Tree
  Gm24635
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084661 (Evidence)
• NCBI Gene
  115488240

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084661	Ensembl Gene Model | MGI Sequence Detail	128	C57BL/6J
transcript	ENSMUST00000122712	Ensembl | MGI Sequence Detail	128	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm24635:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120465	Chr13:80306781-80306784 (+)	1 bp