Snord80 Gene Detail

Summary

• Symbol
  Snord80
• Name
  small nucleolar RNA, C/D box 80
• Synonyms
  Gm24489

• Feature Type
  snoRNA gene
• IDs
  MGI:5454266
  NCBI Gene: 115487645
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:160865171-160865251 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  36

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454266	snoRNA gene	Chr1:160865171-160865251 (+)
129S1/SvImJ	ENSMUSG00200006981	snoRNA gene	Chr1:158360212-158360288 (+)
129S1/SvImJ	ENSMUSG00200006995	snoRNA gene	Chr1:158360209-158360289 (+)
A/J	ENSMUSG00195023626	snoRNA gene	Chr1:157684803-157684883 (+)
A/J	ENSMUSG00195023575	snoRNA gene	Chr1:157684806-157684882 (+)
AKR/J	ENSMUSG00220013974	snoRNA gene	Chr1:157475818-157475894 (+)
AKR/J	ENSMUSG00220013986	snoRNA gene	Chr1:157475815-157475895 (+)
BALB/cJ	ENSMUSG00180037145	snoRNA gene	Chr1:157915918-157915998 (+)
BALB/cJ	ENSMUSG00180037081	snoRNA gene	Chr1:157915921-157915997 (+)
C3H/HeJ	ENSMUSG00175047890	snoRNA gene	Chr1:157995425-157995501 (+)
C3H/HeJ	ENSMUSG00175047916	snoRNA gene	Chr1:157995422-157995502 (+)
C57BL/6NJ	ENSMUSG00215041734	snoRNA gene	Chr1:157884083-157884159 (+)
C57BL/6NJ	ENSMUSG00215041774	snoRNA gene	Chr1:157884080-157884160 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035754	snoRNA gene	Chr1:151638998-151639078 (+)
CAST/EiJ	ENSTCUG00005020987	snoRNA gene	Chr1:156517866-156517942 (+)
CAST/EiJ	ENSTCUG00005020997	snoRNA gene	Chr1:156517863-156517943 (+)
CBA/J	ENSMUSG00210021642	snoRNA gene	Chr1:157893189-157893265 (+)
CBA/J	ENSMUSG00210021648	snoRNA gene	Chr1:157893186-157893266 (+)
DBA/2J	ENSMUSG00185047250	snoRNA gene	Chr1:162134053-162134129 (+)
DBA/2J	ENSMUSG00185047264	snoRNA gene	Chr1:162134050-162134130 (+)
FVB/NJ	ENSMUSG00205010075	snoRNA gene	Chr1:156970871-156970951 (+)
FVB/NJ	ENSMUSG00205010067	snoRNA gene	Chr1:156970874-156970950 (+)
JF1/MsJ	ENSUMUG00000023559	snoRNA gene	Chr1:161294804-161294884 (+)
JF1/MsJ	ENSUMUG00000023522	snoRNA gene	Chr1:161294807-161294883 (+)
LP/J	ENSMUSG00230017924	snoRNA gene	Chr1:161761598-161761678 (+)
LP/J	ENSMUSG00230017851	snoRNA gene	Chr1:161761601-161761677 (+)
NOD/ShiLtJ	ENSMUSG00190038475	snoRNA gene	Chr1:157722663-157722739 (+)
NOD/ShiLtJ	ENSMUSG00190038555	snoRNA gene	Chr1:157722660-157722740 (+)
NZO/HlLtJ	ENSMUSG00225005556	snoRNA gene	Chr1:165371950-165372026 (+)
NZO/HlLtJ	ENSMUSG00225005650	snoRNA gene	Chr1:165371947-165372027 (+)
PWK/PhJ	ENSLUMG00010045003	snoRNA gene	Chr1:156681677-156681753 (+)
PWK/PhJ	ENSLUMG00010045048	snoRNA gene	Chr1:156681674-156681754 (+)
SPRET/EiJ	ENSMSPG00010042303	snoRNA gene	Chr1:160093264-160093340 (+)
SPRET/EiJ	ENSMSPG00010042355	snoRNA gene	Chr1:160093261-160093341 (+)
WSB/EiJ	ENSIUOG00005015701	snoRNA gene	Chr1:157281903-157281983 (+)
WSB/EiJ	ENSIUOG00005015694	snoRNA gene	Chr1:157281906-157281982 (+)

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000065735 (Evidence), ENSMUSG00002075950 (Evidence)
• NCBI Gene
  115487645

Representative Sequences			Length	Strain/Species
genomic	115487645	NCBI Gene Model | MGI Sequence Detail	81	C57BL/6J
transcript	XR_004936762	RefSeq | MGI Sequence Detail	81	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Snord80:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9678	Chr1:160865172-160865183 (+)	7 bp