Gm24474 Gene Detail

Summary

• Symbol
  Gm24474
• Name
  predicted gene, 24474

• Feature Type
  lncRNA gene
• IDs
  MGI:5454251
  NCBI Gene: 102634964
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:70696523-70697481 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454251	lncRNA gene	Chr12:70671454-70864251 (+)
129S1/SvImJ	ENSMUSG00200033746	lncRNA gene	Chr12:62625438-62717284 (+)
A/J	ENSMUSG00195015385	lncRNA gene	Chr12:65313669-65405478 (+)
AKR/J	ENSMUSG00220015236	lncRNA gene	Chr12:63115148-63214065 (+)
BALB/cJ	ENSMUSG00180034338	lncRNA gene	Chr12:64312731-64404519 (+)
C3H/HeJ	ENSMUSG00175030278	lncRNA gene	Chr12:67407082-67498881 (+)
C57BL/6NJ	ENSMUSG00215032721	lncRNA gene	Chr12:63686460-63785374 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035559	lncRNA gene	Chr12:63650147-63741940 (+)
CBA/J	ENSMUSG00210031468	lncRNA gene	Chr12:63877082-63968874 (+)
DBA/2J	ENSMUSG00185004853	lncRNA gene	Chr12:65776435-65868217 (+)
FVB/NJ	ENSMUSG00205033872	lncRNA gene	Chr12:63517460-63609272 (+)
JF1/MsJ	ENSUMUG00000032890	lncRNA gene	Chr12:69751146-69848329 (+)
LP/J	ENSMUSG00230022793	lncRNA gene	Chr12:72742693-72841611 (+)
NOD/ShiLtJ	ENSMUSG00190012522	lncRNA gene	Chr12:62931531-63030466 (+)
NZO/HlLtJ	ENSMUSG00225038400	lncRNA gene	Chr12:74819322-74911095 (+)
PWK/PhJ	ENSLUMG00010033796	lncRNA gene	Chr12:63813874-63905869 (+)
SPRET/EiJ	ENSMSPG00010028156	lncRNA gene	Chr12:65508165-65598919 (+)
WSB/EiJ	ENSIUOG00005012836	lncRNA gene	Chr12:63565732-63656885 (+)

Homology

• Gene Tree
  Gm24474
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  1

• Ensembl
  ENSMUSG00000114005 (Evidence)
• NCBI Gene
  102634964

Representative Sequences			Length	Strain/Species
genomic	102634964	NCBI Gene Model | MGI Sequence Detail	959	C57BL/6J
transcript	XR_381651	RefSeq | MGI Sequence Detail	692	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm24474:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113688	Chr12:70696768-70696776 (+)	249 bp
Tssr113689	Chr12:70696787-70696805 (+)	273 bp
Tssr113690	Chr12:70696849-70696862 (+)	333 bp