Gm24233 Gene Detail

Summary

• Symbol
  Gm24233
• Name
  predicted gene, 24233

• Feature Type
  snoRNA gene
• IDs
  MGI:5454010
  NCBI Gene: 115485895
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:59180858-59180979 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454010	snoRNA gene	Chr12:59180858-59180979 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038638	snoRNA gene	Chr12:58337906-58338027 (+)
A/J	MGP_AJ_G0038629	snoRNA gene	Chr12:56209262-56209383 (+)
AKR/J	MGP_AKRJ_G0038565	snoRNA gene	Chr12:58008700-58008821 (+)
BALB/cJ	MGP_BALBcJ_G0038614	snoRNA gene	Chr12:56594628-56594749 (+)
C3H/HeJ	MGP_C3HHeJ_G0038277	snoRNA gene	Chr12:58114784-58114905 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039160	snoRNA gene	Chr12:60058724-60058845 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035922	snoRNA gene	Chr12:54583346-54583467 (+)
CAST/EiJ	MGP_CASTEiJ_G0037420	snoRNA gene	Chr12:52989050-52989171 (+)
CBA/J	MGP_CBAJ_G0038249	snoRNA gene	Chr12:62258924-62259045 (+)
DBA/2J	MGP_DBA2J_G0038438	snoRNA gene	Chr12:56132664-56132785 (+)
FVB/NJ	MGP_FVBNJ_G0038390	snoRNA gene	Chr12:55397826-55397947 (+)
LP/J	MGP_LPJ_G0038478	snoRNA gene	Chr12:58368748-58368869 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038390	snoRNA gene	Chr12:63861346-63861467 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039262	snoRNA gene	Chr12:57443432-57443553 (+)
PWK/PhJ	MGP_PWKPhJ_G0037105	snoRNA gene	Chr12:50474448-50474569 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036863	snoRNA gene	Chr12:51841760-51841881 (+)
WSB/EiJ	MGP_WSBEiJ_G0037652	snoRNA gene	Chr12:58011875-58011996 (+)

Homology

• Gene Tree
  Gm24233
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000077505 (Evidence)
• NCBI Gene
  115485895

Representative Sequences			Length	Strain/Species
genomic	115485895	NCBI Gene Model | MGI Sequence Detail	122	C57BL/6J
transcript	XR_004937890	RefSeq | MGI Sequence Detail	122	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm24233:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113566	Chr12:59180585-59180602 (+)	-264 bp
Tssr113567	Chr12:59180613-59180625 (+)	-239 bp